View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9786_low_3 (Length: 459)
Name: NF9786_low_3
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_3 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 42266305 - 42265913
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
42266305 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagag |
42266206 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga-aaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42266205 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
42266106 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266105 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
42266006 |
T |
|
| Q |
314 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42266005 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagcttta |
42265913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 48701736 - 48702128
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48701736 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
48701835 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48701836 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
48701935 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48701936 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
48702035 |
T |
|
| Q |
314 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48702036 |
gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta |
48702128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 30950098 - 30950481
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
30950098 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagag |
30950197 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30950198 |
taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggaaaaaac |
30950297 |
T |
|
| Q |
215 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30950298 |
cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatagg |
30950397 |
T |
|
| Q |
315 |
agaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30950398 |
agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
30950481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 42270937 - 42270632
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270937 |
ttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
42270838 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270837 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
42270738 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
42270737 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaaca |
42270639 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
42270638 |
agcttta |
42270632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 106 - 407
Target Start/End: Original strand, 24520031 - 24520332
Alignment:
| Q |
106 |
gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
24520130 |
T |
|
| Q |
206 |
gggaaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct |
304 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24520131 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct |
24520230 |
T |
|
| Q |
305 |
tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct |
404 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24520231 |
tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct |
24520329 |
T |
|
| Q |
405 |
tta |
407 |
Q |
| |
|
||| |
|
|
| T |
24520330 |
tta |
24520332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 48697133 - 48697439
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697133 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
48697232 |
T |
|
| Q |
202 |
taaggggaaaa--accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactc |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
48697233 |
taaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactc |
48697332 |
T |
|
| Q |
300 |
tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaac |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
48697333 |
tctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaac |
48697431 |
T |
|
| Q |
400 |
aagcttta |
407 |
Q |
| |
|
|||||||| |
|
|
| T |
48697432 |
aagcttta |
48697439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 102 - 396
Target Start/End: Original strand, 30945479 - 30945775
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945479 |
ttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
30945578 |
T |
|
| Q |
202 |
taaggggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc |
301 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945579 |
taagggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctc |
30945678 |
T |
|
| Q |
302 |
tcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30945679 |
tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
30945775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 102 - 390
Target Start/End: Complemental strand, 10427595 - 10427315
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10427595 |
ttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaa |
10427496 |
T |
|
| Q |
202 |
taagggga-aaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc |
299 |
Q |
| |
|
|||||||| ||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||| |
|
|
| T |
10427495 |
taaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctc |
10427397 |
T |
|
| Q |
300 |
tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427396 |
tctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
113 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
212 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
| Q |
213 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
307 |
Q |
| |
|
|| | |||| ||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782932 |
ac-atgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
223 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
322 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
323 |
aactaacacaaactaggagaaacctcaca |
351 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
153 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga-aaaaccacggggcaagagtagagaactttcactaagtggaa |
250 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || ||||||||||| |||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
179 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
111 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
179 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
166 |
aacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 5823190 - 5823582
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
5823190 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
5823289 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5823290 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
5823389 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823390 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag |
5823489 |
T |
|
| Q |
314 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5823490 |
gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta |
5823582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 5818515 - 5818820
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5818515 |
ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaa |
5818614 |
T |
|
| Q |
202 |
taaggggaaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5818615 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct |
5818714 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
5818715 |
ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca |
5818813 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
5818814 |
agcttta |
5818820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 2817178 - 2817510
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
2817178 |
cacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagag |
2817277 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2817278 |
taacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggaaaaaac |
2817377 |
T |
|
| Q |
215 |
cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaata |
312 |
Q |
| |
|
||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2817378 |
cacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaata |
2817477 |
T |
|
| Q |
313 |
ggagaatacaaactaacacaaactaggagaaac |
345 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |
|
|
| T |
2817478 |
ggagaatactaactaatacaaactaggagaaac |
2817510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 102 - 396
Target Start/End: Complemental strand, 54546198 - 54545902
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
54546198 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaa |
54546100 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54546099 |
taaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactct |
54546000 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
54545999 |
ctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
54545902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 24659138 - 24659287
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24659138 |
ttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaa |
24659237 |
T |
|
| Q |
202 |
taagggg-aaaaaccacggggcaagagtagagaactttcactaagtggaaga |
252 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659238 |
taaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 4579360 - 4579255
Alignment:
| Q |
108 |
accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
4579261 |
T |
|
| Q |
208 |
gaaaaa |
213 |
Q |
| |
|
|||||| |
|
|
| T |
4579260 |
gaaaaa |
4579255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 114 - 285
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
| Q |
114 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag-gggaaaa |
212 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||| |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa |
31204878 |
T |
|
| Q |
213 |
accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
285 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||| | |||||||| || ||||||||||| |||||||| |
|
|
| T |
31204879 |
atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 390
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
252 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
351 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
| Q |
352 |
ggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
24671263 |
ggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
138 |
aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaac-cacggggcaagagtaga-gaac |
235 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||| |||| ||| || |||||| ||| ||||||||| ||| |||||||||| | || |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt |
35977162 |
T |
|
| Q |
236 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
294 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
| Q |
265 |
tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt |
364 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| ||| ||||||||||||||||||||||| | |
|
|
| T |
4579241 |
tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat |
4579152 |
T |
|
| Q |
365 |
tttctctctatattttttctctcact |
390 |
Q |
| |
|
|| |||||||||||||| |||||||| |
|
|
| T |
4579151 |
ttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
| Q |
88 |
ctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataa |
144 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
25877142 |
ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 36420220 - 36420054
Alignment:
| Q |
114 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa |
213 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||| ||||||| | |||| ||||| |||| |||||||||||| | |||||||||| | ||| | |
|
|
| T |
36420220 |
gtaacaaaatattatcatgtagttaaaatatgagatgagaaaaaaagaacaacacacataata-tttacgtggaaatctttcaacaaatacagaaaaaga |
36420122 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
285 |
Q |
| |
|
| ||||||||| |||||| ||| || |||||| | |||||||||| || ||||||||||||| ||||| |
|
|
| T |
36420121 |
ctacggggcaaaagtagaaaacatttgctaagttggagaaattacaaga----tctctaaatacaatgagag |
36420054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 2817514 - 2817558
Alignment:
| Q |
363 |
tttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
2817514 |
ttttcctctctatattttttctctcattaccctaaacaagtttta |
2817558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 9444007 - 9444399
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
9444007 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
9444106 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9444107 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
9444206 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9444207 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
9444306 |
T |
|
| Q |
314 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9444307 |
gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta |
9444399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 9439374 - 9439679
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439374 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
9439473 |
T |
|
| Q |
202 |
taaggggaaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
9439474 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct |
9439573 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
9439574 |
ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca |
9439672 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
9439673 |
agcttta |
9439679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
117 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
173 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 41718812 - 41718420
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
41718812 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
41718713 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga-aaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41718712 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
41718613 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41718612 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag |
41718513 |
T |
|
| Q |
314 |
gagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41718512 |
gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta |
41718420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 34360271 - 34359966
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34360271 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaa |
34360172 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34360171 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct |
34360072 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34360071 |
ctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaaca |
34359973 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
34359972 |
agcttta |
34359966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 41723451 - 41723146
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723451 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
41723352 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
41723351 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct |
41723252 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
41723251 |
ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca |
41723153 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
41723152 |
agcttta |
41723146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 29585302 - 29585608
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585302 |
ttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
29585401 |
T |
|
| Q |
202 |
taaggggaaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29585402 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactct |
29585501 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
29585502 |
ctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagaca |
29585601 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
29585602 |
agcttta |
29585608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 119 - 407
Target Start/End: Complemental strand, 34352546 - 34352258
Alignment:
| Q |
119 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa-ccac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
218 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
34352347 |
T |
|
| Q |
318 |
atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34352346 |
atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagcttta |
34352258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 27878624 - 27879008
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27878624 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagag |
27878723 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27878724 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa |
27878823 |
T |
|
| Q |
214 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878824 |
ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag |
27878923 |
T |
|
| Q |
314 |
gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
27878924 |
gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
27879008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 1235016 - 1234711
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235016 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
1234917 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1234916 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct |
1234817 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
1234816 |
ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca |
1234718 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
1234717 |
agcttta |
1234711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 26976133 - 26976438
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976133 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
26976232 |
T |
|
| Q |
202 |
taaggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26976233 |
taaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct |
26976332 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
26976333 |
ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca |
26976431 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
26976432 |
agcttta |
26976438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 102 - 407
Target Start/End: Original strand, 27873992 - 27874297
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873992 |
ttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
27874091 |
T |
|
| Q |
202 |
taaggggaaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
300 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874092 |
taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct |
27874191 |
T |
|
| Q |
301 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
27874192 |
ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaaca |
27874290 |
T |
|
| Q |
401 |
agcttta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
27874291 |
agcttta |
27874297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 102 - 390
Target Start/End: Complemental strand, 18968192 - 18967912
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
18968192 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaa |
18968093 |
T |
|
| Q |
202 |
taagggga-aaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | ||| |
|
|
| T |
18968092 |
taaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctc |
18967994 |
T |
|
| Q |
300 |
tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||| | |||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967993 |
tctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 102 - 374
Target Start/End: Complemental strand, 30986827 - 30986552
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctcaac |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
30986827 |
ttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctcaac |
30986729 |
T |
|
| Q |
199 |
aaataagg---ggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30986728 |
aaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattacc |
30986629 |
T |
|
| Q |
296 |
actctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta |
374 |
Q |
| |
|
|||||||||| ||||||| ||||| ||| |||| | ||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
30986628 |
actctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta |
30986552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 146 - 387
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
| Q |
146 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa--aaaccacggggcaagagtagagaactttcacta |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
244 |
agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa |
343 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||| | | | ||||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa |
30966729 |
T |
|
| Q |
344 |
acctcac-aggagaaactaatt-tttctctctatattttttctctc |
387 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966728 |
acctcacaagtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
30967810 |
cacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagag |
30967711 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacga |
151 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967710 |
taacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
205 |
ggggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
290 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966762 |
agggaaaaatcatggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 23012415 - 23012667
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||| |||| | | |||| |||| |||||| |||| ||||| || || | || |||| || || |
|
|
| T |
23012415 |
cacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaag |
23012514 |
T |
|
| Q |
115 |
taacaaaa-tattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
212 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | ||| || ||||||||||| |
|
|
| T |
23012515 |
taaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtcacaaattaaggggaaaa |
23012613 |
T |
|
| Q |
213 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
267 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012614 |
acca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 109 - 407
Target Start/End: Original strand, 5198664 - 5198962
Alignment:
| Q |
109 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
5198763 |
T |
|
| Q |
209 |
aaaa-accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
5198764 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat |
5198863 |
T |
|
| Q |
308 |
aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5198864 |
aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta |
5198962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 825881 - 825632
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
825881 |
cacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
825782 |
T |
|
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga--aaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
825781 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa |
825682 |
T |
|
| Q |
213 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagga |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825681 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 22 - 388
Target Start/End: Complemental strand, 15603272 - 15602905
Alignment:
| Q |
22 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaa |
121 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | || |||||||||| |||||||||| | |||||||| |||| || ||| ||||||| ||| |
|
|
| T |
15603272 |
catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa |
15603173 |
T |
|
| Q |
122 |
atattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga-aaaaccacggg |
220 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15603172 |
atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg |
15603073 |
T |
|
| Q |
221 |
gcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaata |
320 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
15603072 |
gcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaata |
15602973 |
T |
|
| Q |
321 |
caaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca |
388 |
Q |
| |
|
| ||||||||| |||| ||||||||||| || | || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602972 |
ctaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 102 - 262
Target Start/End: Complemental strand, 830450 - 830288
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830450 |
ttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
830351 |
T |
|
| Q |
202 |
taagggga--aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
262 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830350 |
taaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 107 - 366
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
| Q |
107 |
taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg |
206 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
207 |
ggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta |
306 |
Q |
| |
|
||||||||||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || || |
|
|
| T |
28715971 |
ggaaaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttccta |
28715872 |
T |
|
| Q |
307 |
taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt |
366 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715871 |
taaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 98 - 390
Target Start/End: Original strand, 30396909 - 30397191
Alignment:
| Q |
98 |
actattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
197 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
30396909 |
actattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaa |
30397006 |
T |
|
| Q |
198 |
caaataaggg-gaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
295 |
Q |
| |
|
|||||||||| ||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| |
|
|
| T |
30397007 |
caaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc |
30397106 |
T |
|
| Q |
296 |
actctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||| | || ||||||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
30397107 |
-ctctatgtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 319
Target Start/End: Original strand, 13843719 - 13844014
Alignment:
| Q |
22 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaa |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||| ||| |||| |||| |||||| |||||||| | | || |||||||| ||| |
|
|
| T |
13843719 |
catactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaa |
13843818 |
T |
|
| Q |
122 |
atattatcacgcagctaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaccacggg |
220 |
Q |
| |
|
||||||||||| | |||| |||| ||||||| || || |||||||| |||||| |||||||||||||||||||||||||| |||||| | || |
|
|
| T |
13843819 |
atattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggagaaaaattatagg |
13843915 |
T |
|
| Q |
221 |
gcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
319 |
Q |
| |
|
|| |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843916 |
ttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
| Q |
312 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
830205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 195 - 321
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
195 |
caacaaataaggggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
294 |
Q |
| |
|
||||||||||| |||||||| |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaacaacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta- |
8004194 |
T |
|
| Q |
295 |
cactctctcttataaataggagaatac |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8004193 |
cactctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 31592923 - 31593068
Alignment:
| Q |
113 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
212 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| ||||||| |||| |
|
|
| T |
31592923 |
agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataagaaaaaaa |
31593022 |
T |
|
| Q |
213 |
accacggggcaagagtagagaactttcactaagtggaagaaattaca |
259 |
Q |
| |
|
||||| | |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31593023 |
accac-agataagagtagagaactttcactaaccgaaagaaattaca |
31593068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 396
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
| Q |
312 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta |
825549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 105 - 321
Target Start/End: Original strand, 13840245 - 13840456
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
||||||||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |||||| || || || |||||||||| || |
|
|
| T |
13840245 |
ggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaa |
13840341 |
T |
|
| Q |
205 |
ggggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct |
304 |
Q |
| |
|
|||| ||||| | || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
13840342 |
gggggaaaac-atggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctct |
13840439 |
T |
|
| Q |
305 |
tataaataggagaatac |
321 |
Q |
| |
|
|| ||||| ||||||| |
|
|
| T |
13840440 |
taaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
120 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaccacgg |
219 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |||||||| ||||| |||||| || |||||| | | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataatggaaaaaacaattg |
12175866 |
T |
|
| Q |
220 |
ggcaagagtagagaa |
234 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
12175867 |
gacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
| Q |
161 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacag |
260 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| ||||||||||||||||||| | ||| |||||| |||||||| ||| | |||||||| | |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataaggggaaaaaccacgagacaaaagtagataactttcattaaacgagagaaattataa |
42117778 |
T |
|
| Q |
261 |
gacctctct |
269 |
Q |
| |
|
||||||||| |
|
|
| T |
42117777 |
gacctctct |
42117769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
115 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
164 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 105 - 390
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
16183735 |
T |
|
| Q |
205 |
gggg-aaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
16183736 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct |
16183834 |
T |
|
| Q |
303 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183835 |
ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 105 - 396
Target Start/End: Complemental strand, 30235334 - 30235038
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30235334 |
ggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataa |
30235236 |
T |
|
| Q |
205 |
gggg--aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattaccactctc |
301 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
30235235 |
ggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctc |
30235136 |
T |
|
| Q |
302 |
tcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactactcta |
396 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30235135 |
tcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactcta |
30235038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 76 - 321
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
| Q |
76 |
acgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat |
175 |
Q |
| |
|
||||||||| |||||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8139940 |
acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat |
8140039 |
T |
|
| Q |
176 |
attttacgtggaaacccctcaacaaataagggga-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaa |
274 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
8140040 |
a-tttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaa |
8140138 |
T |
|
| Q |
275 |
tacaaggagagtacaattaccactctctcttataaataggagaatac |
321 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
8140139 |
tacaaggagagacaaattacc-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
| Q |
20 |
agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | || ||||||| | ||||||||| |||||| |||||||| || |||| ||||||| || |
|
|
| T |
8138384 |
agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca |
8138479 |
T |
|
| Q |
120 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga-aaaaccacg |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
8138480 |
aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaacaaacaaggggagaaaaccacg |
8138578 |
T |
|
| Q |
219 |
gggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
285 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8138579 |
aggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 25441161 - 25441076
Alignment:
| Q |
15 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||| |
|
|
| T |
25441161 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccact |
25441076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
113 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa |
211 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa |
5102703 |
T |
|
| Q |
212 |
aaccacggggcaagagtagagaactttcactaagtggaagaaatta |
257 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102704 |
aaccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 36528420 - 36528520
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
36528420 |
ggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataa |
36528518 |
T |
|
| Q |
205 |
gg |
206 |
Q |
| |
|
|| |
|
|
| T |
36528519 |
gg |
36528520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 102 - 390
Target Start/End: Original strand, 27228 - 27508
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27228 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaa |
27327 |
T |
|
| Q |
202 |
taagggg-aaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc |
299 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| || |
|
|
| T |
27328 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tc |
27426 |
T |
|
| Q |
300 |
tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||||| ||||||| |||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
27427 |
tctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 102 - 390
Target Start/End: Complemental strand, 46191544 - 46191266
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46191544 |
ttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaacaaa |
46191447 |
T |
|
| Q |
202 |
taagggg-aaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc |
299 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| ||| |
|
|
| T |
46191446 |
taaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctc |
46191348 |
T |
|
| Q |
300 |
tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
390 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
46191347 |
tctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 105 - 285
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
105 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa |
30697218 |
T |
|
| Q |
205 |
ggggaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
285 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30697219 |
ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 4130399 - 4130215
Alignment:
| Q |
102 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
4130399 |
ttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaacaaa |
4130301 |
T |
|
| Q |
202 |
t-aaggggaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
285 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4130300 |
taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
241 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
321 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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