View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_4 (Length: 447)
Name: NF9786_low_4
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 37558635 - 37558216
Alignment:
| Q |
18 |
agattattttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagttcgaaatcctag |
117 |
Q |
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| T |
37558635 |
agattattttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagtttgaaatcctag |
37558536 |
T |
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| Q |
118 |
ttcataacacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggttttt |
217 |
Q |
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| T |
37558535 |
ttcataacacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggttttt |
37558436 |
T |
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| Q |
218 |
cctaaacacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcact |
317 |
Q |
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| T |
37558435 |
cctaaacacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcact |
37558336 |
T |
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| Q |
318 |
ggttttgttgcttcaagaagaatctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagat |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558335 |
ggttttgttgcttcaagaagaacctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagat |
37558236 |
T |
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| Q |
418 |
cctgcagaatttcacctttg |
437 |
Q |
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| T |
37558235 |
cctgcagaatttcacctttg |
37558216 |
T |
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