View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_5 (Length: 441)
Name: NF9786_low_5
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 4701258 - 4701693
Alignment:
| Q |
6 |
tttcgtgttggtcaagtttatgtcgacatggttcgcaacactaccaggggtgtttcttttgcatgttgcaaatggtggactgatgcagttactttggtat |
105 |
Q |
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| T |
4701258 |
tttcgtgttggtcaagtttatgtcgacatggttcgcaacactaccaggggtgtttcttttgcatgttgcaaatggtggactgatgcagttactttggtat |
4701357 |
T |
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| Q |
106 |
tggagaaattttatggaagatgcaaaaatcagacagaaaatgaacactccttccggtttggaggcatagatggatagttgatttctacatttttgtcgca |
205 |
Q |
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| T |
4701358 |
tggagaaattttatggaagatgcaaaaatcagacagaaaatgaacactccttccggtttggaggcatagatggatagttgatttctacatttttgtcgca |
4701457 |
T |
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| Q |
206 |
ccaagctgacatgaacttcatcttttgagcttgtttcatctgtccttcattaagatcatactgcagcaaccaaccactttcacgcatcttgttcatacga |
305 |
Q |
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| T |
4701458 |
ccaagctgacatgaacttcatcttttgagcttgtttcatctgtccttcattaagatcatactgcagcaaccaaccactttcaaacatcttgttcatacga |
4701557 |
T |
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| Q |
306 |
acttgttgtatttattcccttgttcaagtggatgaaacaaactcaatggagcaagttatgagtatcattcatgtaaccatagattagcggcggcatatac |
405 |
Q |
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| T |
4701558 |
acttgttgtatttattcccttgttcaagtggatgaaacaaactcaatggagcaagttatgagtatcattcatgtaaccatagattagcggcggcatatgc |
4701657 |
T |
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| Q |
406 |
tgttttgttagcatgcagtgacatctaaacattcta |
441 |
Q |
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| T |
4701658 |
tgttttgttagtatgcagtgacatctaaacattcta |
4701693 |
T |
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