View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9786_low_6 (Length: 418)
Name: NF9786_low_6
Description: NF9786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9786_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 5591789 - 5591408
Alignment:
| Q |
19 |
atcaagcaggaatagtaccccaagttatgagttccttgtttagtaaaattgagaccttaaagaatcagattgaatttcagctgcatgtgtcctttatcga |
118 |
Q |
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| T |
5591789 |
atcaagcaggaatagtaccccaagttatgagttccttgtttagtaaaattgagaccttaaagaatcagattgaatttcagctgcatgtgtcctttatcga |
5591690 |
T |
|
| Q |
119 |
ggtccattgttaactttgttacatcatagagctatcgttttgaaagtataattgtgctttaatatataagtaaaactaataaatttgtatctatgaagtt |
218 |
Q |
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| T |
5591689 |
ggtctgttgttaactttgttacatcatagagctatcgttttgaaagtataattgtgctttgatatataagtaaaactaataaatttgtatctatgaggtt |
5591590 |
T |
|
| Q |
219 |
gtgtttcaattaagcagctaacacctaaatttatttgttaaaagattcttaaagaagaagtaagagatttgctggacccgtcctttttgagcaaaccaga |
318 |
Q |
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| T |
5591589 |
gtgtttcaattaagcagctaacacctaaatttatttgttaaaagattcttaaagaagaagtaagagatttgctggacccgtcctttttgagcaaaccaga |
5591490 |
T |
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| Q |
319 |
tactacaaatggacatacagggaaagtgactattcctggtaaaccgcctatacaaattcgcgaggcttcaaatggcgtcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5591489 |
tactacaaatggacatacagggaaagtgactattcctggtaaaccgcctatacaaattcgcgaggcttcaaatggcgtcatt |
5591408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 393
Target Start/End: Original strand, 47080313 - 47080459
Alignment:
| Q |
247 |
atttatttgttaaaagattcttaaagaagaagtaagagatttgctggacccgtcctttttgagcaaaccagatactacaaatggacatacagggaaagtg |
346 |
Q |
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| T |
47080313 |
atttaattgtgaaaagattcttaaagaagaagtaagagatttactggatccctcctcattgagcaaaacagaaactgcaaatggacatgcaggaaaaaca |
47080412 |
T |
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| Q |
347 |
actattcctggtaaaccgcctatacaaattcgcgaggcttcaaatgg |
393 |
Q |
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| T |
47080413 |
acctctcctgggaagccgccaatacaaattcgtgagacatcaaatgg |
47080459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 47080117 - 47080213
Alignment:
| Q |
26 |
aggaatagtaccccaagttatgagttccttgtttagtaaaattgagaccttaaagaatcagattgaatttcagctgcatgtgtcctttatcgaggtc |
122 |
Q |
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| T |
47080117 |
aggaataatacctcaagttatgaatgttttgttcaacaaaattgggaccttaaaggaccagagtgaatttcagttgcatgtttcctttatcgaggtc |
47080213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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