View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_high_12 (Length: 252)
Name: NF9787_high_12
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26839531 - 26839478
Alignment:
| Q |
1 |
ttcaaatgttctgtaacgacttagtttctgtagggatattgatttcctccacca |
54 |
Q |
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| T |
26839531 |
ttcaaatgttctgtaacgacttagtttctgtagggattttgatttcctccacca |
26839478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 26839307 - 26839262
Alignment:
| Q |
197 |
actgcttcaacaaaaacagctccaacaaagaccatttgcatctctg |
242 |
Q |
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| T |
26839307 |
actgcttcaacaaaaacagctccaacaaagaccatttgcatctctg |
26839262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 26839368 - 26839338
Alignment:
| Q |
168 |
gggatggtggaataaccaaacaacttgacac |
198 |
Q |
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| T |
26839368 |
gggatggtggaataaccaaacaacttgacac |
26839338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 50974402 - 50974358
Alignment:
| Q |
197 |
actgcttcaacaaaaacagctccaacaaagaccatttgcatctct |
241 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50974402 |
actgcttcaaggaaaacagctccaacaaagaccatttgcatctct |
50974358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50974630 - 50974577
Alignment:
| Q |
1 |
ttcaaatgttctgtaacgacttagtttctgtagggatattgatttcctccacca |
54 |
Q |
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|
||||||||||||||||||| ||||||| |||| ||| || ||||||||||||| |
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| T |
50974630 |
ttcaaatgttctgtaacgatttagtttacgtagagatgttaatttcctccacca |
50974577 |
T |
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