View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9787_high_13 (Length: 252)

Name: NF9787_high_13
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9787_high_13
NF9787_high_13
[»] chr4 (15 HSPs)
chr4 (16-230)||(3427732-3427958)
chr4 (125-212)||(43159842-43159929)
chr4 (125-212)||(38509915-38510002)
chr4 (125-210)||(27756457-27756542)
chr4 (133-212)||(20032911-20032991)
chr4 (125-191)||(55997771-55997837)
chr4 (125-210)||(19328808-19328893)
chr4 (132-210)||(3913646-3913724)
chr4 (138-212)||(21858845-21858921)
chr4 (138-212)||(21914708-21914784)
chr4 (160-212)||(25474655-25474707)
chr4 (134-212)||(2652939-2653017)
chr4 (125-202)||(46871284-46871361)
chr4 (125-210)||(53482374-53482459)
chr4 (130-212)||(6956495-6956577)
[»] scaffold0316 (1 HSPs)
scaffold0316 (125-210)||(1272-1357)
[»] chr5 (10 HSPs)
chr5 (125-212)||(36974075-36974162)
chr5 (132-203)||(24233170-24233241)
chr5 (132-210)||(36603700-36603778)
chr5 (132-212)||(38282491-38282571)
chr5 (140-210)||(19187142-19187212)
chr5 (132-210)||(21067610-21067688)
chr5 (130-210)||(24434109-24434191)
chr5 (144-210)||(39753321-39753387)
chr5 (143-212)||(1179953-1180022)
chr5 (133-181)||(12383964-12384012)
[»] chr8 (11 HSPs)
chr8 (130-210)||(40995826-40995906)
chr8 (157-212)||(15111874-15111929)
chr8 (125-212)||(6108551-6108637)
chr8 (142-196)||(9799269-9799323)
chr8 (151-212)||(885708-885771)
chr8 (130-210)||(12000146-12000226)
chr8 (125-190)||(39609712-39609777)
chr8 (152-212)||(7304962-7305022)
chr8 (125-212)||(27415258-27415345)
chr8 (125-209)||(30478400-30478484)
chr8 (148-200)||(34935132-34935184)
[»] chr3 (13 HSPs)
chr3 (125-210)||(1294911-1294996)
chr3 (125-210)||(42388727-42388812)
chr3 (125-210)||(42411023-42411108)
chr3 (133-212)||(36545181-36545260)
chr3 (130-212)||(50175348-50175430)
chr3 (133-210)||(36563054-36563131)
chr3 (125-212)||(29247299-29247386)
chr3 (148-212)||(25938587-25938651)
chr3 (132-210)||(43178596-43178674)
chr3 (165-210)||(28957720-28957765)
chr3 (148-202)||(26141715-26141769)
chr3 (131-212)||(46930021-46930103)
chr3 (125-209)||(52397381-52397465)
[»] chr1 (14 HSPs)
chr1 (125-210)||(1408606-1408691)
chr1 (135-212)||(4941197-4941274)
chr1 (125-210)||(19940603-19940688)
chr1 (133-212)||(6754115-6754195)
chr1 (130-210)||(46289806-46289886)
chr1 (132-210)||(34663104-34663182)
chr1 (125-212)||(42514243-42514332)
chr1 (125-212)||(16589136-16589224)
chr1 (125-212)||(17063850-17063937)
chr1 (125-212)||(45485042-45485129)
chr1 (141-210)||(48611734-48611803)
chr1 (152-197)||(48768317-48768362)
chr1 (125-181)||(16074040-16074096)
chr1 (131-208)||(4635751-4635828)
[»] chr7 (9 HSPs)
chr7 (130-210)||(37720558-37720638)
chr7 (131-210)||(47903891-47903968)
chr7 (125-212)||(15972137-15972224)
chr7 (125-210)||(28710395-28710480)
chr7 (130-210)||(27916434-27916514)
chr7 (125-212)||(42468947-42469034)
chr7 (130-212)||(8022211-8022293)
chr7 (132-210)||(30486955-30487033)
chr7 (168-212)||(2497699-2497743)
[»] scaffold0272 (1 HSPs)
scaffold0272 (132-210)||(6101-6179)
[»] scaffold0027 (1 HSPs)
scaffold0027 (125-212)||(14216-14304)
[»] chr2 (11 HSPs)
chr2 (125-198)||(25627388-25627461)
chr2 (125-192)||(1991932-1991999)
chr2 (125-212)||(4614281-4614368)
chr2 (125-209)||(6983185-6983269)
chr2 (125-212)||(3037400-3037487)
chr2 (132-210)||(9116408-9116486)
chr2 (132-190)||(27322743-27322801)
chr2 (132-212)||(33085365-33085441)
chr2 (142-195)||(16634423-16634476)
chr2 (152-192)||(20491530-20491570)
chr2 (152-212)||(43077203-43077263)
[»] chr6 (1 HSPs)
chr6 (125-208)||(7195230-7195316)
[»] scaffold0693 (1 HSPs)
scaffold0693 (125-210)||(1148-1233)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 3427732 - 3427958
Alignment:
Q  16 tgtgttgtgagatagaagagggaagaaaaatagatggaaaggaaaggaaagctttgtagtggattgttatgta-------------aaaattataaaagg 102  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||| ||||||    
T  3427732 tgtgtagtgagatagaagatggaagaaaaatagatggaaaggaaaggaaagctttgtagtggattgttatgtatcaaaacaaaaaaaaaattaaaaaagg 3427831  T
Q  103 gtaatgttaaccgctgtctcgctaagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttca 202  Q
     |||||||||||| ||||  | |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  3427832 -taatgttaaccgttgtcgggttaagaaatcaaatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttca 3427930  T
Q  203 ttttaaaattgggtctgagctggtgtga 230  Q
    |||||||||| ||| |||||||||||||    
T  3427931 ttttaaaattaggtttgagctggtgtga 3427958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 43159842 - 43159929
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||    
T  43159842 taagaaaacaaatgtagtaagtattgcattggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaatt 43159929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 38509915 - 38510002
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||| |||||||||||    
T  38509915 taaggaatcaaatgtaataaatattgcattggaacttgtgttgtcaactcctcaaaagtatgaaaagtgttatttttattttaaaatt 38510002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 27756457 - 27756542
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  27756457 taaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 20032911 - 20032991
Alignment:
Q  133 caaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttatt-ttcattttaaaatt 212  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  20032911 caaatgtaataaatattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaatt 20032991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 55997837 - 55997771
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaa 191  Q
    |||||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  55997837 taagaaattaaatgtaataagtattgtattggaacttatgctgtcaactcttcaaaaatataaaaaa 55997771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 19328808 - 19328893
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| ||||||||  |||||||| |||||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||    
T  19328808 taagaagtcaaatgtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaa 19328893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 3913646 - 3913724
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||  |||||||| | |||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||    
T  3913646 tcaaatgtggtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaa 3913724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 21858921 - 21858845
Alignment:
Q  138 gtaataagtattgcattggaacttgtgttgtcaactcttcaaaa--atataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||||||| | | |||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  21858921 gtaataagtattgcctagaaacttgtgttgtcaactcctcaaaaacataaaaaaaatgttattttcattttaaaatt 21858845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 21914784 - 21914708
Alignment:
Q  138 gtaataagtattgcattggaacttgtgttgtcaactcttcaaaa--atataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||||||| | | |||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  21914784 gtaataagtattgcctagaaacttgtgttgtcaactcctcaaaaacataaaaaaaatgttattttcattttaaaatt 21914708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 25474707 - 25474655
Alignment:
Q  160 ttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  25474707 ttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaatt 25474655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 2653017 - 2652939
Alignment:
Q  134 aaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| ||||||||  |||| ||| |||||| ||||||||||||||| ||||||| | | |||||||||||||||||    
T  2653017 aaatgtagtaagtattctattgaaacatgtgttttcaactcttcaaaaacataaaaagtatcattttcattttaaaatt 2652939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 46871284 - 46871361
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttca 202  Q
    |||| |||||||| ||| || |||| ||||| |||||||||||||||||| || |||||||||||| ||||| |||||    
T  46871284 taaggaatcaaatataaaaaatattacattgaaacttgtgttgtcaactcctcgaaaatataaaaagtgttactttca 46871361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 53482374 - 53482459
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||| |||||||| || |||||||||||||||||| |||| |  |||||| | ||||  ||||||||||||||||| | |||||||    
T  53482374 taaggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaa 53482459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 6956495 - 6956577
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||||| || ||||  |||  || ||||||| |||||| || |||| |||||||||||||||||||  |||||||||    
T  6956495 aatcaaatgtaaaaaatattatattataatttgtgttatcaacttttaaaaagtataaaaaatgttattttccctttaaaatt 6956577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 1272 - 1357
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  1272 taagaaaacaaatgtagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 36974162 - 36974075
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  36974162 taagaaaacaaatgtagtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaatt 36974075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 24233170 - 24233241
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcat 203  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||    
T  24233170 tcaaatgtaataagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcat 24233241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 36603778 - 36603700
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||    
T  36603778 tcaaatgcagtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaa 36603700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 38282491 - 38282571
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||| |||||| |||| ||||  || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  38282491 tcaaatataataaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaatt 38282571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 19187142 - 19187212
Alignment:
Q  140 aataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||| || ||||| || ||||||||||||||||||||||  ||||||| |||| ||||||||||||||    
T  19187142 aataagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaa 19187212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 21067610 - 21067688
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||| |||||||| ||||| |||||||||||||| ||||||||||  ||||||| |  || |||||||||||||    
T  21067610 tcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaa 21067688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 24434109 - 24434191
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaa--aatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||| | |||   ||| ||||||||||||||| | |||||||    
T  24434109 aatcaaatgtagtaagcattgcattgaaacttgtgttgtcaactcctaaaacgcataaaaaaaatgttatttttactttaaaa 24434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 39753387 - 39753321
Alignment:
Q  144 agtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| ||||| |||||||| ||||||||||||||||  ||||||| | ||| |||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaa 39753321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 1179953 - 1180022
Alignment:
Q  143 aagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| ||||| ||||| |||||||||||  | ||||| ||||||| ||||||||| |||||||||||    
T  1179953 aagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaatt 1180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 12384012 - 12383964
Alignment:
Q  133 caaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaa 181  Q
    |||||||| ||||||||| |||| || ||||||||||||||| ||||||    
T  12384012 caaatgtagtaagtattgaattgaaatttgtgttgtcaactcctcaaaa 12383964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 40995906 - 40995826
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40995906 aatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 40995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 15111929 - 15111874
Alignment:
Q  157 aacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  15111929 aacttgtgttgtcaactcctaaaaaatataaaaagtgttattttcattttaaaatt 15111874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 6108551 - 6108637
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| |||||||| ||| ||| |||||| ||| |||||||| ||||| ||||||| ||||||| | |||||||||||||||||||    
T  6108551 taagaaaacaaatgtagtaa-tatggcattgaaacatgtgttgttaactcctcaaaaacataaaaagtattattttcattttaaaatt 6108637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 9799323 - 9799269
Alignment:
Q  142 taagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgtta 196  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||| |||||    
T  9799323 taagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgtta 9799269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 885708 - 885771
Alignment:
Q  151 cattggaacttgtgttgtcaactcttcaaaa--atataaaaaatgttattttcattttaaaatt 212  Q
    |||||||| ||||||||||||||| | ||||  ||| |||||||||||||||||||||||||||    
T  885708 cattggaatttgtgttgtcaactccttaaaagaataaaaaaaatgttattttcattttaaaatt 885771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 12000226 - 12000146
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||| ||||| ||||||||||| ||||| |||||||   ||||||  ||||||||| ||||||||| |||||||    
T  12000226 aatcaaatgtagtaagtgttgcattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaa 12000146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 39609777 - 39609712
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaa 190  Q
    ||||||| ||||||| |||||||||| |||  |||||||||||||||||| ||||||  |||||||    
T  39609777 taagaaaacaaatgttataagtattgtattataacttgtgttgtcaactcctcaaaagcataaaaa 39609712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 7305022 - 7304962
Alignment:
Q  152 attggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| |||||||||||||||||| ||||||  | |||| |||||||||||| |||||||||    
T  7305022 attgaaacttgtgttgtcaactcctcaaaagcagaaaatatgttattttcactttaaaatt 7304962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 27415345 - 27415258
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| |||||||| ||  ||| ||| ||||| ||||| |||||||||||  |||||||||| |||| ||||||||| | |||||||||    
T  27415345 taaggaatcaaatataggaagcattacattgaaacttatgttgtcaacttctcaaaaatatcaaaagtgttatttttactttaaaatt 27415258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 30478400 - 30478484
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaa 209  Q
    ||||||| |||||||| |||||||||| ||| |||||||  |||||| |  ||||||  | ||||| | ||||||||||||||||    
T  30478400 taagaaagcaaatgtagtaagtattgcgttgaaacttgtactgtcaatttctcaaaagcacaaaaagtattattttcattttaaa 30478484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 34935184 - 34935132
Alignment:
Q  148 ttgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttatttt 200  Q
    |||||||||||||||||   |||||||||||||||| |||||| || ||||||    
T  34935184 ttgcattggaacttgtgcattcaactcttcaaaaatttaaaaagtgatatttt 34935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 1294996 - 1294911
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| |||||||||||||||||| ||||| || ||||| ||||| ||||||| ||| ||||||||||||| |||||||||||||    
T  1294996 taagaagtcaaatgtaataagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaa 1294911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 42388727 - 42388812
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| ||||||||| ||||||||| ||||||| ||||| |||||||| |||||||| ||||||| |||||||||||| ||||||    
T  42388727 taagaagtcaaatgtagtaagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaa 42388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 42411023 - 42411108
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| | ||||||| ||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||| || ||||||    
T  42411023 taagaagtgaaatgtagtaagtattgcattggaacttgcgttgtcaagttttcaaaaacataaaaaatgttatttttatcttaaaa 42411108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 36545260 - 36545181
Alignment:
Q  133 caaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||| ||||||||| |||| |||||||| ||||||||| ||||||  ||||||| ||||||||||| |||||||||    
T  36545260 caaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaatt 36545181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 50175348 - 50175430
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||| ||  |||||||||||||||| ||||||||||||||| | ||||| ||||||| ||||||||| | |||||||||    
T  50175348 aatcaaatatagaaagtattgcattggaatttgtgttgtcaactcctaaaaaacataaaaattgttatttttactttaaaatt 50175430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 36563054 - 36563131
Alignment:
Q  133 caaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||||| ||||||||| |||| |||||||| ||||||||| ||||||  ||||||| ||||||||||| |||||||    
T  36563054 caaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 36563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 29247299 - 29247386
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| ||| |||||||  || |||| |||||||||||||||| ||||||| |||||| |||||||| ||||||||| | |||||||||    
T  29247299 taaggaattaaatgtagaaaatattacattggaacttgtgttatcaactcctcaaaagtataaaaagtgttattttaactttaaaatt 29247386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 25938587 - 25938651
Alignment:
Q  148 ttgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| |||||||||||||||| || ||||||  ||||||| ||||||||||| |||||||||    
T  25938587 ttgcattcgaacttgtgttgtcaattcctcaaaagcataaaaagtgttattttcactttaaaatt 25938651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 43178596 - 43178674
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||||| |||| ||||| || ||||  |||||||| || |||| |||||||||||||| ||| |||||||||    
T  43178596 tcaaatgtaataaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaa 43178674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 28957765 - 28957720
Alignment:
Q  165 ttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||    
T  28957765 ttgtcaactcttcgaaaatataaaaagtgttatttttattttaaaa 28957720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 26141769 - 26141715
Alignment:
Q  148 ttgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttca 202  Q
    |||||||||||||||||   ||||||| |||||||| ||||||||| ||||||||    
T  26141769 ttgcattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttca 26141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 46930103 - 46930021
Alignment:
Q  131 atcaaatgtaataagtattgcattggaacttgtgttgtcaact-cttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||| ||| |||| |||||||| || || ||| |||| || |||||| ||||||||||||||||| | |||||||||    
T  46930103 atcaaatgtagtaaatattacattggaatttatgctgttaacttctccaaaaacataaaaaatgttatttttactttaaaatt 46930021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 52397381 - 52397465
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaa 209  Q
    |||| ||| |||||||  ||||||| |||| ||| ||||||||||||||  | |||| |||||||  || |||||||||||||||    
T  52397381 taaggaattaaatgtagaaagtattacattagaatttgtgttgtcaacttctaaaaagtataaaagttgatattttcattttaaa 52397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 1408606 - 1408691
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| | ||||||| ||| | || |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  1408606 taagaatttaaatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaa 1408691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 4941274 - 4941197
Alignment:
Q  135 aatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||| ||| |||||||||| |||||||||||||||||| ||||||  ||||||| ||||||||| |||||||||||    
T  4941274 aatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaatt 4941197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 19940688 - 19940603
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||| ||||||||||| |||||||||||||| ||||| || ||||||||| ||||||  ||||||| ||||||||||| |||||||    
T  19940688 taaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 19940603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 6754195 - 6754115
Alignment:
Q  133 caaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttatt-ttcattttaaaatt 212  Q
    |||||||| ||| |||||||||||||||||||| |||||||| ||||||| || |||| ||||||| ||||||||||||||    
T  6754195 caaatgtagtaaatattgcattggaacttgtgtcgtcaactcctcaaaaacattaaaagtgttattcttcattttaaaatt 6754115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 46289886 - 46289806
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||| |||| |||||||||||||| ||||| || ||||||| ||||||||| ||||||| ||||||||||| |||||||    
T  46289886 aatcaagtgtagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaa 46289806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 34663104 - 34663182
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||  ||||||||| ||||||||||||  |||||||| ||||||| |||||||| ||||| |||||||||||||    
T  34663104 tcaaatgtggtaagtattgtattggaacttgtactgtcaacttttcaaaagtataaaaagtgttactttcattttaaaa 34663182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 42514332 - 42514243
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaa--atataaaaaatgttattttcattttaaaatt 212  Q
    |||||||  ||||||| |||||||||||| | || ||||||||||||||| ||||||  ||| |||||||||| |||| |||||||||||    
T  42514332 taagaaagtaaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaaacataaaaaaaatgttttttttattttaaaatt 42514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 16589224 - 16589136
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttca-aaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| ||||||||  | |||||| |||| ||||| |||| ||||||  ||| |||| |||||||||||||||||||||||||||||    
T  16589224 taagaaagcaaatgtagcaggtattgtattgaaacttatgttttcaactgctcagaaaacataaaaaatgttattttcattttaaaatt 16589136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 17063850 - 17063937
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| |||||||||||  ||||||||||||| ||  |||||||| ||||| | ||||| ||||||| ||||||||| | |||||||||    
T  17063850 taaggaatcaaatgtagaaagtattgcattgaaatgtgtgttgttaactcctaaaaaacataaaaattgttatttttactttaaaatt 17063937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 45485129 - 45485042
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| ||||| || |||||||||||||| || ||||||||||||||  | ||||  ||||||  ||||||||| |||||||||||    
T  45485129 taagaaaacaaatatagtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaatt 45485042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 48611803 - 48611734
Alignment:
Q  141 ataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||| | ||||| |||||||||||| |||| ||||||| |||||||| ||||| ||| |||||||||    
T  48611803 ataagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaa 48611734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 48768317 - 48768362
Alignment:
Q  152 attggaacttgtgttgtcaactcttcaaaaatataaaaaatgttat 197  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  48768317 attggaacttgtgttgtcaactctttaaaagtataaaaagtgttat 48768362  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 16074096 - 16074040
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaa 181  Q
    |||| ||||||||||| ||| ||||||||||  | ||||||||||||||||||||||    
T  16074096 taaggaatcaaatgtagtaaatattgcattgatatttgtgttgtcaactcttcaaaa 16074040  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 4635828 - 4635751
Alignment:
Q  131 atcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaa 208  Q
    ||||||| || |||||||| ||||||||  | || ||||||||| ||| ||  ||||||||||||||||||| |||||    
T  4635828 atcaaatatagtaagtattacattggaaaatttgctgtcaactcctcataagcataaaaaatgttattttcactttaa 4635751  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 37720638 - 37720558
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||| ||||||  ||||||| ||||||||||| |||||||    
T  37720638 aatcaaatgtagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 37720558  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 47903968 - 47903891
Alignment:
Q  131 atcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||  ||| |||||||||||||||||||    
T  47903968 atcaaatgtaataagtattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaa 47903891  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 15972224 - 15972137
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| |||||||||||  ||||||| ||||| ||||||||||||||| || ||||||||||||||| | ||||||||| |||||||||    
T  15972224 taaggaatcaaatgtataaagtattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaatt 15972137  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 28710480 - 28710395
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||| ||||||||||| |||||||| |||||||| ||||| ||  ||||| ||||||| ||||||| ||||||||||| |||||||    
T  28710480 taaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaa 28710395  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 27916514 - 27916434
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||| |||||||  |||||  ||||||||||| |||||||    
T  27916514 aatcaaatataataagtattgtattggaatttgtgctgtcaactcctcaaaaacgtaaaatgtgttattttcactttaaaa 27916434  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 42469034 - 42468947
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| ||||||||||| ||||||||  |||| |||||||| |||| |||||| || || ||||||| |||| ||||||||||||||||    
T  42469034 taaggaatcaaatgtagtaagtattaaattgaaacttgtgatgtccactctttaataacataaaaagtgttgttttcattttaaaatt 42468947  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 8022293 - 8022211
Alignment:
Q  130 aatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||||| |  |||||||| ||| |||  |||| ||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  8022293 aatcaaatgcagcaagtattgtattagaaggtgtgatgtcaactcctcaaaaacataaaaaatgttattttcactttaaaatt 8022211  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 30487033 - 30486955
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||  |||||||||||||| || |||||  ||||||| || ||||||||||||||||||| ||| |||||||||    
T  30487033 tcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaa 30486955  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 2497743 - 2497699
Alignment:
Q  168 tcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||||||||||||||| ||||||||  |||||||| |||||||||    
T  2497743 tcaactcttcaaaaatttaaaaaatagtattttcaatttaaaatt 2497699  T

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Target: scaffold0272 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 6101 - 6179
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||| ||||||||||||||||| || || |||||||| |||||||| ||||||| ||||| |||||||||||||    
T  6101 tcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaa 6179  T

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Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 14216 - 14304
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttatt-ttcattttaaaatt 212  Q
    ||||||| |||||||| ||| ||||||||| ||||||||||||||||||| ||||||  ||||||| ||||||| || |||||||||||    
T  14216 taagaaagcaaatgtagtaaatattgcattagaacttgtgttgtcaactcctcaaaagcataaaaagtgttattctttattttaaaatt 14304  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 25627388 - 25627461
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttatt 198  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||||||||| ||||||| ||||||| |||||||    
T  25627388 taagaaagcaaatgtagtaagtattttattgaaacttgtgttgtcaactcctcaaaaacataaaaagtgttatt 25627461  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 1991999 - 1991932
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaat 192  Q
    ||||||| ||||| || |||||||| |||| ||||||||||||||||||| ||||||| |||||||||    
T  1991999 taagaaagcaaatatagtaagtattacattagaacttgtgttgtcaactcctcaaaaacataaaaaat 1991932  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 4614368 - 4614281
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| |||||||| |||||||| |||| ||| || |||||||||||| ||||||| || |||| || |||||| |||||||||||    
T  4614368 taagaaagcaaatgtagtaagtattacattagaatttatgttgtcaactcatcaaaaacatgaaaagtgctatttttattttaaaatt 4614281  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 6983269 - 6983185
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaa 209  Q
    |||| |||||||| ||  ||||||| |||||||||||||| ||||||||| | ||||  ||||||| ||||||||||| ||||||    
T  6983269 taaggaatcaaatatagaaagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcactttaaa 6983185  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 3037400 - 3037487
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    |||| ||||||| |||  || |||| |||||||| ||||||||||||||| | |||| |||||||| ||||| ||| |||||||||||    
T  3037400 taaggaatcaaacgtagaaattattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaatt 3037487  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 9116486 - 9116408
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    ||||||||  ||| ||||||||||||||||||| |||||||| || |||| |||| ||| ||||| ||| |||||||||    
T  9116486 tcaaatgtggtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaa 9116408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 27322743 - 27322801
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaa 190  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||| ||||  |||||||    
T  27322743 tcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaa 27322801  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 33085441 - 33085365
Alignment:
Q  132 tcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||||| ||||||||||| || |||||||| |||||||   |||||||||| |||| ||||||||||| |||||||||    
T  33085441 tcaaatgtagtaagtattgcaatgaaacttgtgatgtcaac---tcaaaaatat-aaaagtgttattttcactttaaaatt 33085365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 16634423 - 16634476
Alignment:
Q  142 taagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgtt 195  Q
    |||||||| |||||||| ||||| |||||||| |||||||  ||||||||||||    
T  16634423 taagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgtt 16634476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 20491530 - 20491570
Alignment:
Q  152 attggaacttgtgttgtcaactcttcaaaaatataaaaaat 192  Q
    ||||||| |||||| ||||||||||||||||| ||||||||    
T  20491530 attggaatttgtgtagtcaactcttcaaaaatttaaaaaat 20491570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 43077263 - 43077203
Alignment:
Q  152 attggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaatt 212  Q
    ||||||| ||||| | ||||||| ||||||  |||||| |||||||||||| |||||||||    
T  43077263 attggaatttgtgctatcaactcctcaaaagcataaaatatgttattttcaatttaaaatt 43077203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 7195230 - 7195316
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatat---aaaaaatgttattttcattttaa 208  Q
    ||||||| |||||||| ||||||||||||   || |||| |||||||||| ||||||||||   ||||||||||||||| |||||||    
T  7195230 taagaaagcaaatgtattaagtattgcataaaaatttgtattgtcaactcctcaaaaatataaaaaaaaatgttatttttattttaa 7195316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 1148 - 1233
Alignment:
Q  125 taagaaatcaaatgtaataagtattgcattggaacttgtgttgtcaactcttcaaaaatataaaaaatgttattttcattttaaaa 210  Q
    |||| |||||||| || |||||||||||||||||| |||| |  |||||| | ||||  ||||||||||||||||| | |||||||    
T  1148 taaggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaa 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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