View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9787_high_14 (Length: 251)

Name: NF9787_high_14
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9787_high_14
NF9787_high_14
[»] chr8 (11 HSPs)
chr8 (4-111)||(44251262-44251368)
chr8 (18-110)||(3234656-3234747)
chr8 (163-246)||(30927917-30928002)
chr8 (161-243)||(7129531-7129615)
chr8 (192-246)||(5924842-5924895)
chr8 (163-246)||(1065417-1065502)
chr8 (163-246)||(41273515-41273600)
chr8 (163-246)||(41293707-41293792)
chr8 (192-246)||(10344356-10344409)
chr8 (18-54)||(3813253-3813289)
chr8 (163-246)||(36064030-36064115)
[»] chr4 (20 HSPs)
chr4 (4-78)||(40184339-40184413)
chr4 (163-246)||(13267464-13267549)
chr4 (162-246)||(19720627-19720713)
chr4 (161-246)||(39010123-39010210)
chr4 (192-246)||(40721950-40722003)
chr4 (158-246)||(51377279-51377369)
chr4 (163-246)||(3222989-3223074)
chr4 (163-246)||(27001395-27001480)
chr4 (163-246)||(44368188-44368273)
chr4 (163-246)||(55267987-55268072)
chr4 (11-54)||(54512273-54512316)
chr4 (162-246)||(7037470-7037556)
chr4 (25-78)||(20281434-20281487)
chr4 (163-235)||(34259815-34259889)
chr4 (157-213)||(42178068-42178127)
chr4 (163-235)||(53662425-53662499)
chr4 (163-226)||(5208333-5208398)
chr4 (161-228)||(8680939-8681008)
chr4 (161-213)||(13389470-13389525)
chr4 (163-226)||(24235320-24235385)
[»] chr3 (18 HSPs)
chr3 (4-112)||(4549490-4549597)
chr3 (4-78)||(860856-860930)
chr3 (162-246)||(11327107-11327193)
chr3 (26-111)||(23308596-23308680)
chr3 (163-246)||(8254027-8254112)
chr3 (163-247)||(27162454-27162540)
chr3 (163-235)||(32931915-32931989)
chr3 (162-246)||(50879594-50879680)
chr3 (161-232)||(2482674-2482747)
chr3 (163-246)||(20714243-20714328)
chr3 (163-246)||(36818956-36819041)
chr3 (162-208)||(43441671-43441720)
chr3 (163-229)||(53932394-53932462)
chr3 (163-246)||(52454078-52454165)
chr3 (163-226)||(108431-108496)
chr3 (163-246)||(3069561-3069645)
chr3 (163-214)||(5398918-5398972)
chr3 (16-112)||(18365771-18365866)
[»] chr1 (23 HSPs)
chr1 (4-87)||(51043020-51043103)
chr1 (16-81)||(36632941-36633006)
chr1 (4-112)||(16299831-16299938)
chr1 (163-246)||(11097870-11097955)
chr1 (4-112)||(17063235-17063342)
chr1 (24-87)||(36632866-36632929)
chr1 (4-110)||(7015910-7016015)
chr1 (161-246)||(25995458-25995545)
chr1 (162-246)||(13813557-13813643)
chr1 (18-87)||(17064061-17064130)
chr1 (4-65)||(41463920-41463981)
chr1 (161-246)||(48871941-48872027)
chr1 (186-246)||(7078486-7078545)
chr1 (18-110)||(9026214-9026304)
chr1 (186-246)||(26547260-26547319)
chr1 (163-246)||(42256460-42256545)
chr1 (9-112)||(10556259-10556360)
chr1 (4-78)||(28033918-28033992)
chr1 (163-244)||(51193119-51193202)
chr1 (166-246)||(25130706-25130788)
chr1 (162-246)||(49699738-49699824)
chr1 (163-246)||(29489345-29489430)
chr1 (163-246)||(36669356-36669441)
[»] chr2 (20 HSPs)
chr2 (163-246)||(36909829-36909914)
chr2 (163-246)||(44484642-44484727)
chr2 (163-246)||(34144537-34144622)
chr2 (163-246)||(35171212-35171297)
chr2 (4-87)||(18318328-18318411)
chr2 (163-246)||(3196073-3196158)
chr2 (186-246)||(36383488-36383547)
chr2 (163-247)||(27307216-27307302)
chr2 (163-246)||(10687941-10688026)
chr2 (165-246)||(29611913-29611993)
chr2 (163-226)||(36435681-36435746)
chr2 (18-66)||(43305270-43305318)
chr2 (186-238)||(44085300-44085351)
chr2 (161-226)||(37257447-37257516)
chr2 (164-246)||(17826052-17826136)
chr2 (163-235)||(15283247-15283321)
chr2 (149-228)||(9695065-9695146)
chr2 (163-214)||(20534068-20534122)
chr2 (163-246)||(29168725-29168810)
chr2 (18-110)||(38623655-38623745)
[»] chr5 (16 HSPs)
chr5 (162-246)||(30574363-30574449)
chr5 (163-244)||(14914372-14914455)
chr5 (162-246)||(22920478-22920564)
chr5 (163-246)||(9594478-9594563)
chr5 (186-246)||(28501643-28501702)
chr5 (24-111)||(1422660-1422746)
chr5 (4-87)||(19264704-19264787)
chr5 (161-230)||(9599730-9599801)
chr5 (161-228)||(39788710-39788779)
chr5 (161-246)||(3263494-3263581)
chr5 (188-246)||(32379915-32379972)
chr5 (163-244)||(32634708-32634791)
chr5 (162-246)||(36416048-36416134)
chr5 (163-246)||(2050927-2051011)
chr5 (163-226)||(3634494-3634559)
chr5 (164-235)||(31025002-31025075)
[»] chr6 (11 HSPs)
chr6 (186-246)||(12501500-12501559)
chr6 (162-246)||(12500013-12500099)
chr6 (162-246)||(12507342-12507428)
chr6 (162-246)||(12508802-12508888)
chr6 (9-112)||(31636873-31636975)
chr6 (4-65)||(5583584-5583645)
chr6 (163-246)||(2056783-2056868)
chr6 (163-228)||(3339503-3339570)
chr6 (161-226)||(25995440-25995507)
chr6 (191-232)||(21210290-21210330)
chr6 (163-226)||(17417241-17417306)
[»] chr7 (13 HSPs)
chr7 (162-246)||(33050182-33050268)
chr7 (163-235)||(13437198-13437272)
chr7 (163-246)||(37149475-37149561)
chr7 (186-246)||(8326151-8326210)
chr7 (163-246)||(30864403-30864488)
chr7 (161-246)||(44175543-44175630)
chr7 (201-246)||(1790032-1790076)
chr7 (163-235)||(43079629-43079703)
chr7 (163-235)||(44511139-44511213)
chr7 (162-229)||(2347062-2347131)
chr7 (163-246)||(20406541-20406626)
chr7 (163-246)||(27164823-27164908)
chr7 (162-211)||(42118715-42118766)
[»] scaffold0026 (1 HSPs)
scaffold0026 (162-226)||(113624-113690)
[»] scaffold0011 (1 HSPs)
scaffold0011 (155-235)||(18587-18669)
[»] scaffold0004 (1 HSPs)
scaffold0004 (163-246)||(249128-249213)
[»] scaffold0085 (1 HSPs)
scaffold0085 (166-246)||(31286-31366)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 44251262 - 44251368
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 103  Q
    |||| |||||||| |||||   |||||| || ||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || |||||||| |||    
T  44251262 ttaaataatgacccaaaaaatataatatttgtattcaaagttgtgtaatcaatgcattaaatgtttcctcttttggcttaaaat-tttctcttttggctt 44251360  T
Q  104 ccttaacc 111  Q
    ||||||||    
T  44251361 ccttaacc 44251368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 3234747 - 3234656
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 110  Q
    |||||||||||||| |||||||||| ||||||||||| || ||||||   ||| || ||||| ||||| | || |||||||||||||||||||    
T  3234747 aaaaagggtaatatttgcattcaaaattgtgtaatcaatgaattaaaggcttcttcatttggcttaaagt-ttcctcttttgacttccttaac 3234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 30928002 - 30927917
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||||||||| ||||||||||||| || |||||| |||||| |||| || |||||||    
T  30928002 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctca-tactcatatgatggtcttatcctctctct 30927917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 7129531 - 7129615
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctc 243  Q
    |||| |||| ||||||| ||||||||   ||||||| ||||| |||||||||||||||| |||||||||||| |||||||| ||||    
T  7129531 ttgataaataatatttgtacaaccattttgtgacaacttttggacaactttctctcaca-tactcacatgattttcttttcctctc 7129615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 5924842 - 5924895
Alignment:
Q  192 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||    
T  5924842 aatttttgtacaactttctctctcat-actcacatgatgttcttttcatatctct 5924895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 1065417 - 1065502
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  1065417 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 1065502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 41273515 - 41273600
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  41273515 gagaaatgatatttgtacaaacaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 41273600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 41293792 - 41293707
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||  |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  41293792 gagaaatgatatttttacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcttctctct 41293707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 10344356 - 10344409
Alignment:
Q  192 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||||||||||| ||| |||||||||||| ||||||| |||||||    
T  10344356 aatttttggacaactttctctctcat-actcacatgatgctcttttcctctctct 10344409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 3813253 - 3813289
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatca 54  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  3813253 aaaaatggtaatatttgcattcaaagttgtgtaatca 3813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 36064030 - 36064115
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| |||   ||||||| ||||| |||| |||||||| ||| ||||||||||  ||||| ||||||||||    
T  36064030 gagaaatgatatttgtacaatcattttgtgacaacttttggacaattttctctctcat-actcacatgacattcttatcatctctct 36064115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 40184413 - 40184339
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 78  Q
    |||| |||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  40184413 ttaaataataacttaaaaaggataatatatgtattcaaagttgtgtaatcattgcattaaatatttcttcttttg 40184339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 13267549 - 13267464
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||   ||||||| ||||| | ||||||||||||||| ||||||||||| |||||||| |||||||    
T  13267549 gagaaatgatatttgtacaaccattttgtgacaaattttggaaaactttctctcacat-actcacatgattttcttttcctctctct 13267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 19720713 - 19720627
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||||||| |||   |||||||| ||||||| ||||||||||| | |||||||||| || |||||||| |||||||    
T  19720713 tgagaaatgatatttgcacatccattttgtgacaacttttgaataactttctctctc-ttactcacataatattcttttcctctctct 19720627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 39010210 - 39010123
Alignment:
Q  161 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||| |||||||   |||||||| ||||  ||| ||||||||| || |||||| ||||||||||| ||||||||||    
T  39010210 ttgagaaatgatatttgtacaaccattttgtgacaactttttgacagctttctctctca-tactcaaatgatgttcttatcatctctct 39010123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 40722003 - 40721950
Alignment:
Q  192 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  40722003 aatttttggacaactttctctctcat-actcacatgatgttcttttcctctctct 40721950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 51377369 - 51377279
Alignment:
Q  158 ttgttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||| ||||||||||||||| |||||||   |||||||| |||||  |||||||||||| || ||||||||||||| |||| || |||||||    
T  51377369 ttgtagagaaatgatatttgtacaaccaatttgtgacaacttttgtccaactttctctctca-tactcacatgatggtcttatcctctctct 51377279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 3222989 - 3223074
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || |||||||||||||   |||||||||||||    
T  3222989 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggctttttcatctctct 3223074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 27001480 - 27001395
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  27001480 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 27001395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 44368273 - 44368188
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||| |||||||||||||  || |||||||||||| |||| ||||||||||    
T  44368273 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctcttat-actcacatgatggtcttatcatctctct 44368188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 55268072 - 55267987
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||| |||||||| |||| || ||||||||||||| |||| || |||||||    
T  55268072 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttatctctca-tactcacatgatgatcttatcctctctct 55267987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 54512316 - 54512273
Alignment:
Q  11 atgacctaaaaagggtaatatatgcattcaaagttgtgtaatca 54  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    
T  54512316 atgacctaaaaagggtaatgtttacattcaaagttgtgtaatca 54512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 7037556 - 7037470
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||   |||||||| ||||| |||| |||||||| || ||||||| ||||| |||| || |||||||    
T  7037556 tgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttctctctca-tactcacgtgatggtcttatcttctctct 7037470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 20281487 - 20281434
Alignment:
Q  25 gtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 78  Q
    ||||||| |||||| ||| ||||||||||| |||||||||| |||| |||||||    
T  20281487 gtaatatttgcatttaaaattgtgtaatcaatgcattaaatgtttcatcttttg 20281434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 34259815 - 34259889
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||||| |||||||   |||||||| | ||||||||||||||||| || ||||||||| || |||||    
T  34259815 gagaaatgatatttgtacaaccattttgtgacaactgttgaacaactttctctctca-tactcacattatcttctt 34259889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 42178127 - 42178068
Alignment:
Q  157 tttgttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctc 213  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||| || ||||||||    
T  42178127 tttgttgagaaatgatatttgtacaatcattatgtgacaatttttgaataattttctctc 42178068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 53662499 - 53662425
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||||| ||||| ||   || |||||||||| ||||||||||||| || || |||||||||||||||    
T  53662499 gagaaatgatatttgtacaactattttgtaacaatttttgtacaactttctctctca-tattcacatgatgttctt 53662425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 5208398 - 5208333
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||||||    
T  5208398 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacat 5208333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 8680939 - 8681008
Alignment:
Q  161 ttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 228  Q
    ||||||||||||||||| ||||||   |||||| | |||||| ||||||||||||| || |||||||||||    
T  8680939 ttgagaaatgatatttgtacaaccattatgtgatattttttggacaactttctctctca-tactcacatga 8681008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 13389525 - 13389470
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat--gtgacaatttttg-aacaactttctctc 213  Q
    ||||||||||||||||| ||||||||  |||||||||||||  |||||||||||||    
T  13389525 ttgagaaatgatatttgaacaaccattggtgacaatttttgcgacaactttctctc 13389470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 24235320 - 24235385
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||| |||| ||   |||||||||||||| ||||||||||||| || |||||||||    
T  24235320 gagaaatgatatttgtacaatcaatttgtgacaatttttgtacaactttctctctca-tactcacat 24235385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 4549597 - 4549490
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 103  Q
    |||| |||||||| ||||||| |||||| ||||||||||||||||| || | |||||| |||| || ||||||| | ||||||| || ||||||||||||    
T  4549597 ttaaataatgacccaaaaaggttaatatttgcattcaaagttgtgttattaatgcattgaatactttctcttttagcttaaaat-tttctcttttgactt 4549499  T
Q  104 ccttaacca 112  Q
    |||||||||    
T  4549498 ccttaacca 4549490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 860930 - 860856
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 78  Q
    |||| |||||||||||||| |||||| | |||||||||||||||||||| | |  ||||||||||| ||||||||    
T  860930 ttaaataatgacctaaaaatggtaatgtttgcattcaaagttgtgtaataaatatattaaatattttctcttttg 860856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 11327107 - 11327193
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  11327107 tgagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 11327193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 23308596 - 23308680
Alignment:
Q  26 taatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacc 111  Q
    |||||| | |||||||| ||||||||||| ||||||||||| |||||||||||  | ||||||||  |||||| ||||||||||||    
T  23308596 taatatttacattcaaaattgtgtaatcaatgcattaaatacttcctcttttgactaaaaatatt-atcttttaacttccttaacc 23308680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 8254027 - 8254112
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||   ||||||| ||| | ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  8254027 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctcat-actcacatgatggtcttatcatctctct 8254112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 27162540 - 27162454
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctctc 247  Q
    ||||| ||||||||| ||||||||   || |||| ||||||||||||||||||| || ||||||||||||||| || || ||||||||    
T  27162540 gagaagtgatatttgtacaaccattttgtaacaacttttgaacaactttctctctca-tactcacatgatgttgttatcctctctctc 27162454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 32931989 - 32931915
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| ||||    
T  32931989 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtctt 32931915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 50879594 - 50879680
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| ||||| |   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  50879594 tgagaaatgatatttgtacaactaaattgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcttctctct 50879680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 2482747 - 2482674
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgtt 232  Q
    ||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||| || || ||||||||||||    
T  2482747 ttgagaaatgatatttgtacatccattttgtgacaacttttgaacaactttctctctca-taatcacatgatgtt 2482674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 20714243 - 20714328
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  20714243 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 20714328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 36818956 - 36819041
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||| ||| |||| || |||||||    
T  36818956 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatcatggtcttatcctctctct 36819041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 43441671 - 43441720
Alignment:
Q  162 tgagaaatgatatttgcacaaccat---gtgacaatttttgaacaacttt 208  Q
    |||||||||||||||| ||||||||   ||||||||||||||||||||||    
T  43441671 tgagaaatgatatttgtacaaccattatgtgacaatttttgaacaacttt 43441720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 53932462 - 53932394
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgat 229  Q
    ||||||||||||||| ||||||||   ||||||||||||| ||||||||| ||| || ||||||||||||    
T  53932462 gagaaatgatatttgtacaaccattttgtgacaatttttggacaactttcactctca-tactcacatgat 53932394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 52454165 - 52454078
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacat-tactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| |||||  |||||||||||| ||| ||||||||||||| |||| || |||||||    
T  52454165 gagaaatgatatttgtacaatcaatttgtgacaacttttgttcaactttctctctcatatactcacatgatggtcttatcctctctct 52454078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 108431 - 108496
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||| || |||||||||    
T  108431 gagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctctca-tactcacat 108496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 3069645 - 3069561
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   ||||||||  |||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  3069645 gagaaatgatatttgtacaaccaatttgtgacaa-ctttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 3069561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 5398918 - 5398972
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctca 214  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||||    
T  5398918 gagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctca 5398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 18365866 - 18365771
Alignment:
Q  16 ctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacca 112  Q
    |||||||||||||||| | | ||||||||| |||||| | |||||||||   || ||||||||  || |||| || |||||||| ||||||||||||    
T  18365866 ctaaaaagggtaatatttaccttcaaagttatgtaataaatgcattaaaagctttctcttttgactt-aaattttcctcttttggcttccttaacca 18365771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 51043020 - 51043103
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 87  Q
    |||| |||| |||||||||||||||||| |  ||||||||||||||||||| ||||||||||| |||||||||||  |||||||    
T  51043020 ttaaataataacctaaaaagggtaatatttatattcaaagttgtgtaatcaatgcattaaatacttcctcttttgacttaaaat 51043103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 36632941 - 36633006
Alignment:
Q  16 ctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtt 81  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  36632941 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggtt 36633006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 16299938 - 16299831
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 103  Q
    |||| |||| ||| |||||||||||||| |||||||||| ||||||||||| || |||||||| || || |||||| ||||||| || ||| |||  |||    
T  16299938 ttaaataattacccaaaaagggtaatatctgcattcaaaattgtgtaatcaatgaattaaatactttcttttttggcttaaaat-ttcctcgtttagctt 16299840  T
Q  104 ccttaacca 112  Q
    |||||||||    
T  16299839 ccttaacca 16299831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 11097955 - 11097870
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||| || ||||||||| || |||||||| |||||||    
T  11097955 gagaaatgatatttgtacatccattttgtgacaacttttgaacaactttctctctca-tactcacataatattcttttcctctctct 11097870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 17063235 - 17063342
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 103  Q
    |||| ||||||||||| ||| ||||||| | ||||| |||||||  ||||| ||||||||||  ||| |||||||  ||||||| || ||||||||||||    
T  17063235 ttaaataatgacctaataagagtaatatttacattcgaagttgtagaatcaatgcattaaatgcttcatcttttgacttaaaat-ttcctcttttgactt 17063333  T
Q  104 ccttaacca 112  Q
     ||||||||    
T  17063334 acttaacca 17063342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 36632929 - 36632866
Alignment:
Q  24 ggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 87  Q
    |||||||| |||||||||||||||||||||| ||||||||||  ||| |||||| | |||||||    
T  36632929 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgattcatctttttgcttaaaat 36632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 7016015 - 7015910
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 103  Q
    |||| ||||||||  |||| || ||||| |||||||||| ||||||||||| ||||||||||  ||||||||| |  ||||||  || |||||||| |||    
T  7016015 ttaaataatgaccccaaaaaggaaatatttgcattcaaaattgtgtaatcaatgcattaaatgcttcctctttagacttaaaa-cttcctcttttggctt 7015917  T
Q  104 ccttaac 110  Q
    |||||||    
T  7015916 ccttaac 7015910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 25995458 - 25995545
Alignment:
Q  161 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  25995458 ttgagaaatgatatttgtacaatcaatttgtgacaagttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 25995545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 13813557 - 13813643
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  13813557 tgagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 13813643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 17064130 - 17064061
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 87  Q
    ||||||| |||||| |||||| ||||||  ||||||| ||||||||||||||  |||||||| |||||||    
T  17064130 aaaaaggataatatttgcatttaaagtttagtaatcaatgcattaaatattttttcttttggcttaaaat 17064061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 41463981 - 41463920
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaat 65  Q
    |||| |||||| | ||||||| |||||| ||||||||||||| |||||||| ||||||||||    
T  41463981 ttaaataatgatccaaaaaggataatatttgcattcaaagttatgtaatcaatgcattaaat 41463920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 48872027 - 48871941
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat--gtgacaa-tttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||| ||||| ||  ||||||| |||||| ||||||||||| | ||| |||||||||||||||||||| |||||||    
T  48872027 ttgagaaatgatatttgtacaactattcgtgacaactttttggacaactttctc-ctcat-actcacatgatgttcttttcctctctct 48871941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 7078545 - 7078486
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||||||||||||||||| || ||||||||| || |||||||| |||||||    
T  7078545 tgtgacaacttttgaacaactttctctctca-tactcacataatattcttttcttctctct 7078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 9026304 - 9026214
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 110  Q
    ||||| |||||||| | |||| ||| ||||||||||| ||||||||||  ||| |||||||| ||||||| || ||||||||||||| |||||    
T  9026304 aaaaaaggtaatatttacatttaaa-ttgtgtaatcaatgcattaaatgcttcatcttttggcttaaaat-tttctcttttgacttcattaac 9026214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 26547260 - 26547319
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||||||||||||||| || || |||||| || |||||||| |||||||    
T  26547260 tgtgacaatttttgaacaactttctctctca-tattcacataatattcttttcttctctct 26547319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 42256460 - 42256545
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||| | ||||||||||||| || ||||||||||||| |||| || |||||||    
T  42256460 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctca-tactcacatgatggtcttatcctctctct 42256545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 10556360 - 10556259
Alignment:
Q  9 taatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttcctta 108  Q
    ||||||||  |||||||||| || ||||||||||||| || || || | ||||||||  |||||||||||  ||||||| ||  ||||||||||||||||    
T  10556360 taatgaccccaaaagggtaa-atctgcattcaaagttatgcaaccaatacattaaatgcttcctcttttgacttaaaat-ttcttcttttgacttcctta 10556263  T
Q  109 acca 112  Q
    ||||    
T  10556262 acca 10556259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 28033918 - 28033992
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 78  Q
    |||| |||||||  |||||| | ||||| |||||| ||||||||||||||| || |||||||  |||||||||||    
T  28033918 ttaaataatgactcaaaaagagcaatatttgcatttaaagttgtgtaatcaatgtattaaatgcttcctcttttg 28033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 51193202 - 51193119
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 244  Q
    ||||||||||||||| ||| |||   | | |||||||||| ||||||||||||| || ||||||||||||| ||||||| |||||    
T  51193202 gagaaatgatatttgtacatccattttataacaatttttggacaactttctctctca-tactcacatgatgctcttttcctctct 51193119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 25130706 - 25130788
Alignment:
Q  166 aaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatgatcttatcctctctct 25130788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 49699824 - 49699738
Alignment:
Q  162 tgagaaatgatatttgcacaaccatgt---gacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||| |   || ||||||| ||||||||||| ||  || |||||||||||||||||||  |||||||    
T  49699824 tgagaaatgatatttgtacaaccattttatgataattttttaacaactttctttcttat-actcacatgatgttctttttctctctct 49699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 29489430 - 29489345
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   ||||| || ||| | ||||||||||||| || ||||||||||||| |||| || |||||||    
T  29489430 gagaaatgatatttgtacaaccattttgtgataactttggtacaactttctctctca-tactcacatgatggtcttatcctctctct 29489345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 36669441 - 36669356
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   ||||| |||||||| |||||||| |||| ||| |||||||||||||| || || |||||||    
T  36669441 gagaaatgatatttgtacaatcaatttgtgataatttttgtacaactttttctctcat-actcacatgatgtttttatcctctctct 36669356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 36909914 - 36909829
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||   ||||||| ||||| |||||||||||||||| |||||||||||| |||||||| |||||||    
T  36909914 gagaaatgatatttgtacaaccattttgtgacaacttttggacaactttctctcaca-tactcacatgattttcttttcctctctct 36909829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 44484727 - 44484642
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||   || |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  44484727 gagaaatgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcat-actcacatgatgttcttatcatctctct 44484642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 34144622 - 34144537
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||||||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  34144622 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 34144537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 35171297 - 35171212
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  35171297 gagaaatgatatttgtacaaccattttgtgacaattttggtacaactttctctctcat-actcacatgatggtcttatcatctctct 35171212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 18318411 - 18318328
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 87  Q
    |||| |||| ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||  ||  |||||||| |||||||    
T  18318411 ttaaataattacccaaaaagagtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctttatcttttggcttaaaat 18318328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 3196158 - 3196073
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcat-actcacatgatgatcttatcatctctct 3196073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 36383488 - 36383547
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  36383488 tgtgacaacttttgtacaactttctctctcat-actcacatgatgttcttatcatctctct 36383547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 27307302 - 27307216
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctctc 247  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || ||||||||    
T  27307302 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctctc 27307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 10687941 - 10688026
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||  ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  10687941 gagaaatgatatttgtacaaacaatttgtgacaacttttatacaactttctctctcat-actcacatgatggtcttatcatctctct 10688026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 29611993 - 29611913
Alignment:
Q  165 gaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||   |||||||||||||| ||||| |||||||   |||||||||||||||||| || |||||||    
T  29611993 gaaatgatatttgcataaccattttgtgacaatttttga-caactctctctca---tactcacatgatgttcttatcctctctct 29611913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 36435681 - 36435746
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||| |||||||   |||||||| |||| ||||||||||||||||| |||||||||    
T  36435681 gagaaatgatatttgtacaaccactttgtgacaactttttaacaactttctctcaca-tactcacat 36435746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 43305270 - 43305318
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaata 66  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||||    
T  43305270 aaaaaggataatatttgcatttaaagttgtgtaatcaatgcattaaata 43305318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 44085300 - 44085351
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttc 238  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||||||||||    
T  44085300 tgtgacaatttttggacaattttctatcacat-actcacatgatgttcttttc 44085351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 37257447 - 37257516
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat---gtgacaatttttg-aacaactttctctcacattactcacat 226  Q
    ||||||||||||||||| ||| ||||   ||||||| ||||| |||||||||||||| ||||||||||||    
T  37257447 ttgagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcattactcacat 37257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 17826052 - 17826136
Alignment:
Q  164 agaaatgatatttgcacaaccat--gtgacaattttt-gaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||| ||||||||  ||||||| |||| | | ||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  17826052 agaaatgatatttgtacaaccatttgtgacaacttttaggataactttctctctcat-actcatatgatgttctttttatctctct 17826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 15283321 - 15283247
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||| || ||||||||| || |||||    
T  15283321 gagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctctca-tactcacattatattctt 15283247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 9695146 - 9695065
Alignment:
Q  149 tataattctttgttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 228  Q
    ||||||| |||  |||||||||||||||| ||||||   ||| || |||||||| ||||||||||||| || |||||||||||    
T  9695146 tataattatttaatgagaaatgatatttgtacaaccattatgagataatttttggacaactttctctctca-tactcacatga 9695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 20534122 - 20534068
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctca 214  Q
    |||||||||||||||||||||||   ||||| |||| |||||||| |||||||||    
T  20534122 gagaaatgatatttgcacaaccattttgtgataattgttgaacaattttctctca 20534068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 29168725 - 29168810
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   | |||||| ||||| ||||||||||||| || |||||||||||  ||||| | ||||||||    
T  29168725 gagaaatgatatttgtacaaccattttttgacaacttttgcacaactttctctctca-tactcacatgacattcttattatctctct 29168810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 38623655 - 38623745
Alignment:
Q  18 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 110  Q
    ||||||| |||||| |||||| ||||||||||||||| || |||||||  || || |||||| ||||||| || |||||||| |||| |||||    
T  38623655 aaaaaggataatatttgcatttaaagttgtgtaatcaatgaattaaatgctttct-ttttggcttaaaat-ttcctcttttggcttctttaac 38623745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 30574449 - 30574363
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  30574449 tgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcat-actcacatgatggtcttatcatctctct 30574363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 14914372 - 14914455
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 244  Q
    ||||||||||||||| |||||||   |||||||| ||||| |||||||||||| ||| || |||||||||||||||||| |||||    
T  14914372 gagaaatgatatttgtacaaccattttgtgacaacttttggacaactttctcttaca-tattcacatgatgttcttttcctctct 14914455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 22920564 - 22920478
Alignment:
Q  162 tgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||| ||||||| ||||||||   || |||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  22920564 tgagaaataatatttgtacaaccattttgtaacaaattttggacaactttctctctcat-actcacatgatgttcttatcatctctct 22920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 9594478 - 9594563
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  9594478 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 9594563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 28501643 - 28501702
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||    
T  28501643 tgtgacaatttttgtacaactttctctctca-tattcacatgatgttcttatcatctctct 28501702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 1422660 - 1422746
Alignment:
Q  24 ggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacc 111  Q
    |||||||| ||||||||||||||  |||||| |||||| |||  || ||||||||| ||||||| || |||||||| |||||||||||    
T  1422660 ggtaatatttgcattcaaagttggataatcaatgcattgaatgcttactcttttggcttaaaatctt-ctcttttggcttccttaacc 1422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 19264787 - 19264704
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 87  Q
    |||| |||||||  ||||| |||||| | ||||||||||||||  |||||| |||||||||||||| ||||||||  |||||||    
T  19264787 ttaaataatgactcaaaaatggtaatgtttgcattcaaagttggataatcaatgcattaaatattttctcttttgccttaaaat 19264704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 9599801 - 9599730
Alignment:
Q  161 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatg 230  Q
    ||||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||||||||||    
T  9599801 ttgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatg 9599730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 39788779 - 39788710
Alignment:
Q  161 ttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 228  Q
    ||||||||||||||||| ||||||   ||||||||| ||||| ||||||||||||| || |||||||||||    
T  39788779 ttgagaaatgatatttgtacaaccattatgtgacaacttttggacaactttctctctca-tactcacatga 39788710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 3263581 - 3263494
Alignment:
Q  161 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||| |||||||   |||||||| ||||| |||| ||| |||| || ||||||||||||| |||| || |||||||    
T  3263581 ttgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttttctctca-tactcacatgatggtcttatcctctctct 3263494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 32379972 - 32379915
Alignment:
Q  188 tgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||| ||||||||||||||||||| || ||||||||||||||| || || |||||||    
T  32379972 tgacaacttttgaacaactttctctctca-tactcacatgatgttgttatcctctctct 32379915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 32634708 - 32634791
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 244  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||    
T  32634708 gagaaatgatatttgtacaatcaatctgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctct 32634791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 36416134 - 36416048
Alignment:
Q  162 tgagaaatgatatttgcacaaccatgtg---acaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||| |    |||||||||  |||||||||||||||| ||||||||| || ||||| | ||||||||    
T  36416134 tgagaaatgatatttgtacaaccattttctaacaattttttgacaactttctctcaca-tactcacattatcttcttattatctctct 36416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 2050927 - 2051011
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   ||| |||||||||| |||||||| ||||||| | ||||||| |||||| |||| |||||||    
T  2050927 gagaaatgatatttgtacaaccattttgtaacaatttttggacaactttatctcaca-tgctcacat-atgttcgtttcctctctct 2051011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 3634494 - 3634559
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||| |||||||||||||||   |||||||||||||  ||||||||||||| || |||||||||    
T  3634494 gagaaattatatttgcacaaccactttgtgacaatttttttacaactttctctctca-tactcacat 3634559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 31025075 - 31025002
Alignment:
Q  164 agaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    |||||||||||||| |||||||   | ||||||||||| |||||||||||||| || ||||||||| || |||||    
T  31025075 agaaatgatatttgtacaaccacattatgacaattttttaacaactttctctctca-tactcacattatattctt 31025002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 12501500 - 12501559
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||    
T  12501500 tgtgacaatttttaaacaactttctctcaca-tacttatatgatgttcttttcatctctct 12501559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 12500099 - 12500013
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12500099 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12500013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 12507428 - 12507342
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12507428 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 12508802 - 12508888
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12508802 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12508888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 31636975 - 31636873
Alignment:
Q  9 taatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttcctta 108  Q
    |||| ||||| ||| |||||||| |||||| ||||||||||||| | | ||||||||| ||  ||||||||||||||||  | |||||||| ||| ||||    
T  31636975 taataacctacaaaaggtaatatttgcatttaaagttgtgtaattaatacattaaatactttttcttttggtttaaaat-gtcctcttttgcctttctta 31636877  T
Q  109 acca 112  Q
    ||||    
T  31636876 acca 31636873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 5583584 - 5583645
Alignment:
Q  4 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaat 65  Q
    |||| |||| |||||||||  ||||||| |||| ||||||||||||||||| ||||||||||    
T  5583584 ttaaataataacctaaaaaatgtaatatttgcaatcaaagttgtgtaatcaatgcattaaat 5583645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 2056783 - 2056868
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||| || |||||||||| || ||||||||||||| |||| || |||||||    
T  2056783 gagaaatgatatttgtacaaccaatttgtgacaacttttgtactactttctctctca-tactcacatgatggtcttatcctctctct 2056868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 3339570 - 3339503
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatga 228  Q
    ||||||||||||||| ||||||||   ||||||| ||||| ||||||||||||| || |||||||||||    
T  3339570 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatga 3339503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 25995440 - 25995507
Alignment:
Q  161 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||||| |||||||   |||| ||||||||| ||||||||||||| || |||||||||    
T  25995440 ttgagaaatgatatttgtacaaccattttgtggcaatttttgtacaactttctctctca-tactcacat 25995507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 21210290 - 21210330
Alignment:
Q  191 caatttttgaacaactttctctcacattactcacatgatgtt 232  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  21210290 caatttttgaacaactttctctctca-tactcacatgatgtt 21210330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 17417306 - 17417241
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacat 226  Q
    ||||||||||||||| |||| |||   ||||||||||||| ||||||||||||| || |||||||||    
T  17417306 gagaaatgatatttgtacaatcattatgtgacaatttttggacaactttctctctca-tactcacat 17417241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 33050182 - 33050268
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  33050182 tgagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 33050268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 13437198 - 13437272
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    |||||||||||||||||||||||   |||||||| |||||||||||||| |||| || |||||||||  |||||||    
T  13437198 gagaaatgatatttgcacaaccattttgtgacaacttttgaacaactttttctctca-tactcacattgtgttctt 13437272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 37149561 - 37149475
Alignment:
Q  163 gagaaatgatatttgcacaaccat--gtgacaa--tttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| ||||||||  |||||||  |||||  | ||||||||||| ||| ||||| ||||||||||||||||||||||    
T  37149561 gagaaatgatatttgtacaaccatttgtgacaacttttttagagaactttctctctcat-actcatatgatgttcttttcatctctct 37149475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 8326151 - 8326210
Alignment:
Q  186 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||| |||| |||||||||||||  || ||||||||||||||||| ||||||||||    
T  8326151 tgtgacaatgtttgcacaactttctctctgat-actcacatgatgttcttatcatctctct 8326210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 30864488 - 30864403
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||| |||||| |||| || |||||||    
T  30864488 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcatatgatggtcttatcctctctct 30864403  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 44175543 - 44175630
Alignment:
Q  161 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||| ||||||| |||| |||   |||| || ||||| ||||||||||||| ||| |||||||||||| | |||||||||||||    
T  44175543 ttgagaaataatatttgtacaatcattttgtgataacttttgtacaactttctctctcat-actcacatgatggttttttcatctctct 44175630  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 1790032 - 1790076
Alignment:
Q  201 acaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  1790032 acaactttctctctcat-actcacatgatgttcttttcctctctct 1790076  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 43079703 - 43079629
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||||| |||||||   ||||| |||||||| ||||||||||||| || ||||||||| || |||||    
T  43079703 gagaaatgatatttgtacaaccactttgtgataatttttggacaactttctctctca-tactcacattatattctt 43079629  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 44511139 - 44511213
Alignment:
Q  163 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||||||||||| | ||||||||   ||||||| ||||| ||||||||||||  || ||||||||||||||||||    
T  44511139 gagaaatgatattcgtacaaccattttgtgacaacttttgtacaactttctctttca-tactcacatgatgttctt 44511213  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 2347131 - 2347062
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgat 229  Q
    |||||||||||||||| |||||||   |||||||| ||| | ||||||||||||| || ||||||||||||    
T  2347131 tgagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctca-tactcacatgat 2347062  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 20406541 - 20406626
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||||||   |||||||| ||||  |||||||||| || || ||||||||||||||| || || |||||||    
T  20406541 gagaaatgatatttgtacaaccatcttgtgacaactttttgacaactttctttctca-tactcacatgatgtttttatcctctctct 20406626  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 27164908 - 27164823
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    ||||||||||||||| |||| ||   |||||||| ||||| | ||||||||||| ||| |||||||||||| |||| || |||||||    
T  27164908 gagaaatgatatttgtacaatcaatttgtgacaacttttgtataactttctctctcat-actcacatgatggtcttatcctctctct 27164823  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 42118766 - 42118715
Alignment:
Q  162 tgagaaatgatatttgcacaacca--tgtgacaatttttgaacaactttctc 211  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||| ||||    
T  42118766 tgagaaatgatatttgtacaaccatttgtgacaatttttggacaactctctc 42118715  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 113624 - 113690
Alignment:
Q  162 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 226  Q
    |||||||||||||||| |||||||   |||||||| |||| ||||||||||||||||| |||||||||    
T  113624 tgagaaatgatatttgtacaaccactttgtgacaactttttaacaactttctctcaca-tactcacat 113690  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 18587 - 18669
Alignment:
Q  155 tctttgttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 235  Q
    ||||| ||||||||||||||||| |||||||   ||||| || ||||| ||||||||||||| || ||||||||||||| ||||    
T  18587 tctttattgagaaatgatatttgtacaaccaatttgtgataacttttgtacaactttctctctca-tactcacatgatggtctt 18669  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 249213 - 249128
Alignment:
Q  163 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||||||||||| ||   ||||| || ||||| ||||||||||||| || ||||||||||||| |||| |||| |||||    
T  249213 gagaaatgatatttgcacaatcaatttgtgataacttttgtacaactttctctctca-tactcacatgatggtcttatcatttctct 249128  T

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Target: scaffold0085 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 31366 - 31286
Alignment:
Q  166 aaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 246  Q
    |||||||||||| ||||||||   || |||| ||||| ||||||||||||||   |||||||||||||||||| || |||||||    
T  31366 aaatgatatttggacaaccattttgtaacaacttttggacaactttctctca---tactcacatgatgttcttatcctctctct 31286  T

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