View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_high_2 (Length: 531)
Name: NF9787_high_2
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 24624678 - 24624152
Alignment:
| Q |
1 |
ttgggggttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatctagaaatctcctca |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24624678 |
ttgggtgttcatatcatcctttgcaactctttttggtttcctagacaggttgagtatgtaattgcgtccttctagaaaaagagatcttgaaatctcctca |
24624579 |
T |
|
| Q |
101 |
agattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttagaggttgatcgaatttcctagatattatttatggcaacttgatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24624578 |
agattcaaattctcccagttcatctgctgataaaaagcacatgatgcatctccttggaggttgatcgaatttcctagatattatttatggcaacttgatc |
24624479 |
T |
|
| Q |
201 |
taaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggatcacatcattattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24624478 |
aaaacggatgtttcgtccacgaaccacattggtgaaagaaaagggttcatcatcggatggaagagcattgacatatatctcccggattacatcattattt |
24624379 |
T |
|
| Q |
301 |
agaagcttgggaagatctaccaacttatcccaattcctggtgtggattatt--tgctatgcccatatacggtcctttttctttgattcagaattccttct |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24624378 |
agaagcttgggaagatctaccaacttatcccaattcctggtgtagattatttgtgctatgcccatacacggtcctttttctttgattcagaattccttct |
24624279 |
T |
|
| Q |
399 |
ccacccacatttcccgctccaccaactctctgcattgttcttgttggtaagtaccttcgaattttaaaggataaaatggttcttgtgcacgtgcccttga |
498 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24624278 |
ccacccacatttcccgctccaccaacgttctgcattgttcttgttggtaagtacctttgaattttaaaggataaaatggttcttgtgcgcgtgcccttga |
24624179 |
T |
|
| Q |
499 |
agaactagctgcattaattcttctcac |
525 |
Q |
| |
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|||||||||||||||||||||| |||| |
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|
| T |
24624178 |
agaactagctgcattaattcttttcac |
24624152 |
T |
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