View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_high_6 (Length: 338)
Name: NF9787_high_6
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 168 - 320
Target Start/End: Complemental strand, 42462866 - 42462708
Alignment:
| Q |
168 |
caataagtctgttggagattgtatgcacactcttcctagcttgg--cggtttgtttaatttagaagagatgacgtgacatgatagaagcttcacctattg |
265 |
Q |
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| T |
42462866 |
caattagtctgttggagattgtatgcacactcttcctagcttgtgtcagtttgtttaatttagaagagatgacgtgacatgatagaagcttcacctattg |
42462767 |
T |
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| Q |
266 |
catgttttctacttgaatattca----ttcaacattcattccttcaactcaacaccagt |
320 |
Q |
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| T |
42462766 |
catgttttctacttgaatattcattcattcaacattcattccttcaactcaacaccagt |
42462708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 42462996 - 42462870
Alignment:
| Q |
1 |
ataaaaaatgggaaggacaatgaaattgcttttattctatcgacataaagcatgccgccttgtctcgtattatgataatatgccaccgaaacaccctaag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
42462996 |
ataaaaaatgggaaggacaatgaaattgattttattctgtcgacataaagcatgcc---ttgtctcgtattatgataatatgccaccgaaacaccctacg |
42462900 |
T |
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| Q |
101 |
caaacattttcgggtttctggaactaaaaa |
130 |
Q |
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| T |
42462899 |
caaacattttcgggtttctggaactaaaaa |
42462870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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