View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_low_12 (Length: 279)
Name: NF9787_low_12
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 26839965 - 26839713
Alignment:
| Q |
19 |
tatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggtaagctgactttgtctttaat |
118 |
Q |
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| T |
26839965 |
tatgctctaaaaatttagtttgaaatgaaataatagcatttgaagtgtgactcatgttgcatttgtgcgattgttaaggtgagctaactttgtttttaat |
26839866 |
T |
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| Q |
119 |
tgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaattctatagttctgcataagttt |
218 |
Q |
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| T |
26839865 |
tgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaattctatagttctgcataagttt |
26839766 |
T |
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| Q |
219 |
cagactccagttttgatcttcgtccagtttttgaattgcgtttctatctaatt |
271 |
Q |
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| T |
26839765 |
cagactccagttttgatcttcgtcctgtttttgaattgcatttctatctaatt |
26839713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 34507533 - 34507444
Alignment:
| Q |
182 |
ggtagtgtcttacaattctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcgtttctatctaatt |
271 |
Q |
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| T |
34507533 |
ggtagtgtcttacaattctatagttctacacaagtttcagaattcagttttgatcttcgtcctgtttttgaattggatttctatctaatt |
34507444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 29354516 - 29354605
Alignment:
| Q |
182 |
ggtagtgtcttacaattctatagttctgcataagtttcagactccagttttgatcttcgtccagtttttgaattgcgtttctatctaatt |
271 |
Q |
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| T |
29354516 |
ggtagtatcttgcaattctatatttctacacaagtttcagaattcagttttgatcttcgtcctgtttttgaattggatttctttctaatt |
29354605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 34507712 - 34507633
Alignment:
| Q |
19 |
tatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggt |
98 |
Q |
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| T |
34507712 |
tatgctctagaattttgatttgaaatgaaataatgggatttgaaatgtgacttatgttgcatttttgcgattgttgaggt |
34507633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 50975062 - 50974826
Alignment:
| Q |
19 |
tatgctctaaaaatttagtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggtaagctgactttgtctttaat |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
50975062 |
tatgctctaaaaattttgtttgaaatgaaataataggatttgaagtgtgactcatgttgcatttgtgcgattgttaaggtgagctgactttgtttttaat |
50974963 |
T |
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| Q |
119 |
tgtcttgacaggtatgcgaagggatttagatagcatttttacattgacaaacttgattttagaggtagtgtcttacaattctatagttctgcataagttt |
218 |
Q |
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| T |
50974962 |
tgtcttgacatgtatgcgaagggatttagatagcatttttacattcacagacttgattttagaggtagtgtcttacaattctatagttctgcataaattt |
50974863 |
T |
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| Q |
219 |
cagactccagttttgatcttcgtccagtttttgaatt |
255 |
Q |
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| T |
50974862 |
cagactccagttttgatcttcgtcctgtttttgaatt |
50974826 |
T |
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