View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9787_low_15 (Length: 252)

Name: NF9787_low_15
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9787_low_15
NF9787_low_15
[»] chr5 (3 HSPs)
chr5 (1-54)||(26839478-26839531)
chr5 (197-242)||(26839262-26839307)
chr5 (168-198)||(26839338-26839368)
[»] chr4 (2 HSPs)
chr4 (197-241)||(50974358-50974402)
chr4 (1-54)||(50974577-50974630)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26839531 - 26839478
Alignment:
Q  1 ttcaaatgttctgtaacgacttagtttctgtagggatattgatttcctccacca 54  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26839531 ttcaaatgttctgtaacgacttagtttctgtagggattttgatttcctccacca 26839478  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 26839307 - 26839262
Alignment:
Q  197 actgcttcaacaaaaacagctccaacaaagaccatttgcatctctg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26839307 actgcttcaacaaaaacagctccaacaaagaccatttgcatctctg 26839262  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 26839368 - 26839338
Alignment:
Q  168 gggatggtggaataaccaaacaacttgacac 198  Q
    |||||||||||||||||||||||||||||||    
T  26839368 gggatggtggaataaccaaacaacttgacac 26839338  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 50974402 - 50974358
Alignment:
Q  197 actgcttcaacaaaaacagctccaacaaagaccatttgcatctct 241  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  50974402 actgcttcaaggaaaacagctccaacaaagaccatttgcatctct 50974358  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50974630 - 50974577
Alignment:
Q  1 ttcaaatgttctgtaacgacttagtttctgtagggatattgatttcctccacca 54  Q
    ||||||||||||||||||| |||||||  |||| ||| || |||||||||||||    
T  50974630 ttcaaatgttctgtaacgatttagtttacgtagagatgttaatttcctccacca 50974577  T

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