View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9787_low_21 (Length: 240)
Name: NF9787_low_21
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29206395 - 29206157
Alignment:
| Q |
1 |
cagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206395 |
cagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaagc |
29206296 |
T |
|
| Q |
101 |
tcttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgtt----------------atg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29206295 |
tcttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgttgtacactatccatgccatg |
29206196 |
T |
|
| Q |
185 |
ccatagagagaaaacttgagagcttttgtaccatatagc |
223 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29206195 |
ccatagagagaaaacttaagagcttttgtaccatatagc |
29206157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 38379668 - 38379783
Alignment:
| Q |
1 |
cagttccaagagaatcatgcattcacatgatgagtagcaagtgctggagctgcacctctggcaatggattttacaacatgcaccaatgtggtcatcaagc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| | | |||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
38379668 |
cagttccaagagaatcatgcatccacatgatgagtagcaagtgttggagctgtgcttttggcaatggattctacaacattgaccaatgtggtcatcaaac |
38379767 |
T |
|
| Q |
101 |
tcttaacaaccccatt |
116 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
38379768 |
tctcaacaactccatt |
38379783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University