View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_low_25 (Length: 220)
Name: NF9787_low_25
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_25 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14015061 - 14015280
Alignment:
| Q |
1 |
ttaatgttttgtagataaaaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatcc |
100 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
14015061 |
ttaatgttttgtatataacaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaaccgttttaattcaattccaatcc |
14015160 |
T |
|
| Q |
101 |
aataagggatgagtccttgtaatctattttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| || |
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| T |
14015161 |
aataagggatgagtccttgtaatctattttctcttaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctcccctattaagctatt |
14015260 |
T |
|
| Q |
201 |
gttcctcaatagtaatgctt |
220 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
14015261 |
gttcgtcaatagtaatgctt |
14015280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 13893156 - 13892939
Alignment:
| Q |
3 |
aatgttttgtagataaaaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaa |
102 |
Q |
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|||||||||||||||| ||| || |||||||||||||||||||||| ||| ||| ||| ||||||||||||| || |||||||| |||||||||||| |
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| T |
13893156 |
aatgttttgtagataacaaagtttgaatggtaaacttccaaagaagtgattactttttaagcttaaaacttgcagctcttttaatttgcttccaatccaa |
13893057 |
T |
|
| Q |
103 |
taagggatgagtccttgtaatctattttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgt |
202 |
Q |
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| T |
13893056 |
taagggacgggtccttctaatctattttctctcaaatcaagcattactaactttctgcagttcattaaggagaaagggatctcctctgttaagctgttgt |
13892957 |
T |
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| Q |
203 |
tcctcaatagtaatgctt |
220 |
Q |
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|||||||||||||||||| |
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| T |
13892956 |
tcctcaatagtaatgctt |
13892939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 13473149 - 13472932
Alignment:
| Q |
3 |
aatgttttgtagataaaaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaa |
102 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||||||||| |||| ||||||| ||||||||||| | || ||||||||| |||||||||||| |
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| T |
13473149 |
aatgttttgtagataacaaagttcgaatggtaaacttccaaagaagtgattcctttgtaagcttaaaacttggagctcttttaattcgcttccaatccaa |
13473050 |
T |
|
| Q |
103 |
taagggatgagtccttgtaatctattttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgt |
202 |
Q |
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|||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| |||||| |||||||||||| |||| | |
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| T |
13473049 |
taagggatgagtccctttaatctattttctctcaaatctagcattactaactttgtacagttcattaaggagacagggatttcctctgttaagatgtttt |
13472950 |
T |
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| Q |
203 |
tcctcaatagtaatgctt |
220 |
Q |
| |
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||||||||| |||||||| |
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| T |
13472949 |
tcctcaatattaatgctt |
13472932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 14025219 - 14025411
Alignment:
| Q |
28 |
aatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctat |
127 |
Q |
| |
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||||||||||||||| |||| | ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
14025219 |
aatggtaaacttccatagaattgatttctttgtaagcttaaaacttgcaactcttttaattcacttccaatccaataagggatgtgtccttctaatctat |
14025318 |
T |
|
| Q |
128 |
tttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgctt |
220 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||| |||||||||||||||| ||||||| |
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| T |
14025319 |
tgtctctcaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctcccctgtcaagttgttgttcctcaataggaatgctt |
14025411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 14084605 - 14084797
Alignment:
| Q |
28 |
aatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctat |
127 |
Q |
| |
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||||| |||||||||||||||| |||| ||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||| ||| ||| |||||||| |
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| T |
14084605 |
aatgggaaacttccaaagaagtgattcctttgtaagcttaaaaattgcaactctttcaattcgcttccaatccaataagggacaagttcttctaatctat |
14084704 |
T |
|
| Q |
128 |
tttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgctt |
220 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
14084705 |
tttctctaaaatcaagcattactaactttgtgcagttcattaaggagaaagggatctcctctgttaagctgttgttccttaacagtaatgctt |
14084797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 13875421 - 13875235
Alignment:
| Q |
34 |
aaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctattttctc |
133 |
Q |
| |
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|||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
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| T |
13875421 |
aaacttccaaagaagtgattcctttgtaagcttaaaacttgcaactcttttaattcacttccaatccaataagggatcagtccttctaatccattttctc |
13875322 |
T |
|
| Q |
134 |
tcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgctt |
220 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| |||||||||||||| | |||||||| |
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| T |
13875321 |
tcaaatccagcattactaactttgtgcagttcattaaggagaaagggatatcctccattaaactgttgttcctcaacattaatgctt |
13875235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 13932286 - 13932477
Alignment:
| Q |
28 |
aatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctat |
127 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
13932286 |
aatggtaaacttccaaagaagtaattcccttttaagcttaaaacttgcaactcttttaattcgcttccaatccaataagggatgtgtccttctaatctat |
13932385 |
T |
|
| Q |
128 |
tttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgct |
219 |
Q |
| |
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| ||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
13932386 |
tgtctctcatgtcaagcattactaactgtgtgcagttcattaaggagaaagggatctcccctgtcaagttgttgttcctcaatagtaatgct |
13932477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 13911736 - 13911953
Alignment:
| Q |
3 |
aatgttttgtagataaaaaatttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaa |
102 |
Q |
| |
|
|||||||||||||| | | ||| ||||||||| |||||||||||| |||| | ||||| |||||||||||||||| ||||||||| |||||||||||| |
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| T |
13911736 |
aatgttttgtagatggcagagttcgaatggtaaatttccaaagaagtgattcctctgtaagcttaaaacttgcaactcttttaattcccttccaatccaa |
13911835 |
T |
|
| Q |
103 |
taagggatgagtccttgtaatctattttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgt |
202 |
Q |
| |
|
|||||||| || || | ||||||||||||| ||||||| ||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||| |||| |
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| T |
13911836 |
taagggataagcccatctaatctattttctttcaaatctagcattatcaactttgtgcagttcattaaggagaaagggatctcccctgttaagctattgt |
13911935 |
T |
|
| Q |
203 |
tcctcaatagtaatgctt |
220 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13911936 |
tcctcaatagtaatgctt |
13911953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 14110410 - 14110606
Alignment:
| Q |
24 |
ttcaaatggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaat |
123 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || |||| ||||||| ||||| | |||||||| ||||||||||| |||||||||||||| | |||| |
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| T |
14110410 |
ttcaaatggtaaacttccaaagaaatgattccttcgtaagcttaaaatttgcagatcttttaatttgcttccaatccagtaagggatgagtccatttaat |
14110509 |
T |
|
| Q |
124 |
ctattttctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgctt |
220 |
Q |
| |
|
||||||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14110510 |
ctattttctctcaaatcaaacattaccatatcagtgcagttcattaaggagaaagggatctcctctgttaagctattgttcctcaatagtaatgctt |
14110606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 14047316 - 14047479
Alignment:
| Q |
56 |
tttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctattttctctcaaatcaagcattactaactt |
155 |
Q |
| |
|
||||||| ||||||| ||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |
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| T |
14047316 |
tttgtaagcttaaaatttgtagatcttttaattcacttccaatccaataagggatgagtccttctaatctattttctctcaaatccagcattaccaactt |
14047415 |
T |
|
| Q |
156 |
tgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgct |
219 |
Q |
| |
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|||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||||| ||||||| |
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|
| T |
14047416 |
tgtgcagttcattaaggaggaagggatctcccctgttaagctattgttcctcaatattaatgct |
14047479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 13862955 - 13862766
Alignment:
| Q |
30 |
tggtaaacttccaaagaagttattcttttgtaaacttaaaacttgcaacttttttaattcacttccaatccaataagggatgagtccttgtaatctattt |
129 |
Q |
| |
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|||||||||||| ||||| | |||| | ||||| |||||||| |||| || |||||| || |||||||||||||||||||||| ||||| || ||| || |
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| T |
13862955 |
tggtaaacttccgaagaaatgattcctatgtaagcttaaaacctgcagctcttttaactcgcttccaatccaataagggatgactccttctagtctgttg |
13862856 |
T |
|
| Q |
130 |
tctctcaaatcaagcattactaactttgtgcaattcattaacgagaaagggatctcctctgttaagctgttgttcctcaatagtaatgct |
219 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
13862855 |
tctctcatatcaagcattactaactttgtgcagttcattaaggaggaagggatctgctctgttaagctattgttcctcaatagtaatgct |
13862766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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