View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_low_3 (Length: 510)
Name: NF9787_low_3
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 36892675 - 36893025
Alignment:
| Q |
12 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataaca |
111 |
Q |
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| T |
36892675 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagtaccaagtgccattcataaca |
36892774 |
T |
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| Q |
112 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
211 |
Q |
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| T |
36892775 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
36892874 |
T |
|
| Q |
212 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggt |
311 |
Q |
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| T |
36892875 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagccgaggcattaggtggtgataaaccttggcagattgctggt |
36892974 |
T |
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| Q |
312 |
tctgccttacaaatgatgtgggatataaaatggtttcaggtacatacaatt |
362 |
Q |
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| T |
36892975 |
tctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaatt |
36893025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 26 - 502
Target Start/End: Original strand, 36881599 - 36882081
Alignment:
| Q |
26 |
gacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaa |
125 |
Q |
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| T |
36881599 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
36881698 |
T |
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| Q |
126 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgag------aatgattaagcattcaaaaccagaactttggaata |
219 |
Q |
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| T |
36881699 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaagcactcaaaaccagaactttggaata |
36881798 |
T |
|
| Q |
220 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
319 |
Q |
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| T |
36881799 |
acttaattcttgcaatggataaggaggagaatacaatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgcctt |
36881898 |
T |
|
| Q |
320 |
acaaatgatgtgggatataaaatggtttcaggtacatacaattattacaaccatattcataatcatttttaaaatattgcttacttattttgaagttagt |
419 |
Q |
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| T |
36881899 |
acaaatgatgtgggatataaaatggtttcaggtacatacaattattacaaccatattcacaatcatttttaaaatattgcttacttattttgaagttagt |
36881998 |
T |
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| Q |
420 |
ttcttaactttaatttttcttaaacctcatggacatgttggattgatttattttaggtctatctattaacataacatttgtga |
502 |
Q |
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| T |
36881999 |
ttcttaactttaatttttcttaaacctcttgcgcatgttggattgacttattttaggtttatctattgacataacatttgtga |
36882081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 36901989 - 36902143
Alignment:
| Q |
208 |
aactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcaga---t |
304 |
Q |
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|||||||||||| ||| ||||||||| |||||| | |||||||| ||||||||||||||||||||||| || || |||||||||| | |||| | |
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| T |
36901989 |
aactttggaatagcttggttcttgcaaaggatgataagcagaatacaatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatat |
36902088 |
T |
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| Q |
305 |
tgctggttctgccttacaaatgatgtgggatataaaatggtttcaggtacataca |
359 |
Q |
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| T |
36902089 |
tgctaggtctgcattacaaatgatgtgggatatgaaatggtttcaggtacataca |
36902143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 36901716 - 36901846
Alignment:
| Q |
28 |
caccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaaga |
127 |
Q |
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||||| ||||||||||||| | |||||| ||| ||||||||| || ||||||||||| || ||||| |||| | | || |||| |||||| ||| | |
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| T |
36901716 |
caccaattttggttgcagctagaaatggcatatatgaaatggtgaaagaaattctaatcgaagcaccaactgccctccgtagtactaactcaagcaaaca |
36901815 |
T |
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| Q |
128 |
aaatgtattgcttgttgcagtcaaatacagg |
158 |
Q |
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| T |
36901816 |
aaatgtattgcttgttgcagtagaatacagg |
36901846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
307 |
ctggttctgccttacaaatgatgtgggatataaaatggtttcaggta |
353 |
Q |
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| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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