View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_low_5 (Length: 377)
Name: NF9787_low_5
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 42197978 - 42198296
Alignment:
| Q |
18 |
acatgttgcaggaaaaaatattaaataatcaggtgtatgctgagaagaaaaattaatactttggaaaatttgaaagagaagctgtattaaaagggataag |
117 |
Q |
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| T |
42197978 |
acatgttgcaggaaaaaatattaaataatcaggtgtatgct-------------aatactttggaaaatttgaaagaggagctgtattaaaagggataag |
42198064 |
T |
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| Q |
118 |
tttatttaannnnnnnnaaaaaataatcatatatttagagatagagtggaagtattgttgactctacttgaccacgtgctcaatcaagttgcataaagca |
217 |
Q |
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| T |
42198065 |
tttatttaatttttttaaaaaaataatcatatatttagagatagagtggaagtattgttgactctacttgaccacgtgctcaatcaagttgcataaagca |
42198164 |
T |
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| Q |
218 |
aacccaaacatgttgagttcatgcatgcaatccaatatccattatggatatgtgactaagacctaagtgcatgcatgttacacaaccaatgagaaataac |
317 |
Q |
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| T |
42198165 |
aacccaaacatgttgagttcatgcatgcaatcca-------------atatgtgactaagacctaagtgcatgcatgttacacaaccaatgagaaataac |
42198251 |
T |
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| Q |
318 |
ataacatgtttggtgcaccggacatcatctagcacactctttttcctatg |
367 |
Q |
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| T |
42198252 |
agaacatgtttggt-----ggacatcatctagcacactctttttcctatg |
42198296 |
T |
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