View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9787_low_6 (Length: 353)
Name: NF9787_low_6
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 11286557 - 11286871
Alignment:
| Q |
3 |
atcaatgattacttctcaacttttaacaacaaatatttttaatgcattcaatgaacattgaaacaataaaagcaaccaaaattattnnnnnnnnnnnnnn |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11286557 |
atcaatgattacttcttaacttttaacaacaaatatttttaatgcattcaatgaacattgaaacaataaaagcaaccaaaattattaaaaaaaaacaaaa |
11286656 |
T |
|
| Q |
103 |
-ggaatagtatctcacactcacagtatgaatctgttgcttcatgtatccattctcataaaccagatgagaaacttgcttctgcagacggtcattctcttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11286657 |
aggaatagtatctcacactcacagtatgaatctgttgcttcatgtatccattctcataaaccagatgagaaacttgcttctgcagacggtcattctcttc |
11286756 |
T |
|
| Q |
202 |
cattaagagcttgttcattgcagacaacttcctattcactgtctgtaaacgtgaagcttcctttctttgcttctcacggcatctacacaagcaattcagc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11286757 |
cattaagagcttgttcattgcagacaacttcctattcactgtctgtaaacgtgaagcttcctttctttgcttctcacggcatctacacaagcaattcagc |
11286856 |
T |
|
| Q |
302 |
aaaagtattgtaagc |
316 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11286857 |
aaaagtattgtaagc |
11286871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 21743339 - 21743464
Alignment:
| Q |
115 |
cacactcacagtatgaatctgttgcttcatgtatccattctcataaaccagatgagaaacttgcttctgcagacggtcattctcttccattaagagcttg |
214 |
Q |
| |
|
|||||| |||||||| | |||||| |||| ||||||||||| | || || || || ||||| ||||||| | ||||| || ||||| || | |||| |
|
|
| T |
21743339 |
cacacttacagtatgcaattgttgcctcataaatccattctcacacacaagctgtgacacttgtttctgcaacctatcattttcctccatcaacaacttg |
21743438 |
T |
|
| Q |
215 |
ttcattgcagacaacttcctattcac |
240 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
21743439 |
ttcattgcagacaatttcctattcac |
21743464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University