View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9787_low_8 (Length: 353)
Name: NF9787_low_8
Description: NF9787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9787_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 29459557 - 29459879
Alignment:
| Q |
19 |
aatctgtcataggaaggctttggttttaatgtattgtcacaattcatatggaaccttcttcattggacggcatacaaatgctgtctttcttatgccaatg |
118 |
Q |
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| T |
29459557 |
aatctgtcataggaaggctttggtttttgtgtattgtcacaattcatatggaaccttcttcattggacggcatacaaatgctgtctttcttatgccaatg |
29459656 |
T |
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| Q |
119 |
ccaatatagtgatatcaatacaaacttttataaaaataatggtaggataagactatctataatagaaaaattagttgtcttaattgtataactaaaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29459657 |
ccaatatagtgatatcaatacaaacttttataaaaataatggtaggataagactatctataatagaaaaattagttgtcttaattgtataactaaaattt |
29459756 |
T |
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| Q |
219 |
gaaaagcaaaacaggtccatcaaatcatatagcggtaatcgaaagacactagtttctgcataaaccgggtattgatgtttacatacttcattgtcaaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29459757 |
gaaaagcaaaacaggtccatcaaatcatatagtgttaatcgaaagacactagtttctgcataaaccgggtattgatgtttacatacttcattgtcaaaat |
29459856 |
T |
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| Q |
319 |
aaaataaaattatataaatgtct |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
29459857 |
aaaataaaattatataaatgtct |
29459879 |
T |
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