View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_high_15 (Length: 242)
Name: NF9788_high_15
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7820921 - 7821109
Alignment:
| Q |
1 |
agatcgatttatgttgatgaagtataaaataaaaaattatcctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatt |
100 |
Q |
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| T |
7820921 |
agatcgatttatgttgatgaagtataaaataaaaaattatcctgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatt |
7821020 |
T |
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| Q |
101 |
tttattactctaatttataataagcgacctatataacatttatccnnnnnnnnnatatgtaaaatagacagaaatttttcatgattgtc |
189 |
Q |
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| T |
7821021 |
tttattactctaatttataataagcgacctatataacatttatcctttttttttttatgtaaaattgacagaaatttttcatgattgtc |
7821109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 7810960 - 7811097
Alignment:
| Q |
6 |
gatttatgttgatgaagtataaaataaaaaattatcctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttat |
105 |
Q |
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| T |
7810960 |
gattcatgttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttat |
7811057 |
T |
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| Q |
106 |
tactctaatttataataagcgacctatataacatttatcc |
145 |
Q |
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| T |
7811058 |
tactctaatttataatatgcgacctatatgacatttatcc |
7811097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 7811161 - 7811194
Alignment:
| Q |
193 |
gaaggtaaggaagttaagttggaaatgaaggtag |
226 |
Q |
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| T |
7811161 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 7811357 - 7811390
Alignment:
| Q |
193 |
gaaggtaaggaagttaagttggaaatgaaggtag |
226 |
Q |
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| T |
7811357 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7811390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 7821129 - 7821162
Alignment:
| Q |
193 |
gaaggtaaggaagttaagttggaaatgaaggtag |
226 |
Q |
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| T |
7821129 |
gaaggtaaggaagttaagttggaaatgaaggtag |
7821162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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