View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9788_high_16 (Length: 233)

Name: NF9788_high_16
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9788_high_16
NF9788_high_16
[»] chr3 (2 HSPs)
chr3 (83-223)||(30805051-30805191)
chr3 (83-223)||(30816821-30816961)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 30805191 - 30805051
Alignment:
Q  83 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30805191 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 30805092  T
Q  183 tnnnnnnntacgtggcatagttattagctaaaagtttgatt 223  Q
    |       |||||||||||||||||||||||||||||||||    
T  30805091 taaaaaaatacgtggcatagttattagctaaaagtttgatt 30805051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 30816961 - 30816821
Alignment:
Q  83 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 182  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30816961 tcatggtactgcatgcaatttgaagtacacacgcacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattgaaaaactgca 30816862  T
Q  183 tnnnnnnntacgtggcatagttattagctaaaagtttgatt 223  Q
    |       ||||||||||||||||||||||| |||||||||    
T  30816861 taaaaaaatacgtggcatagttattagctaagagtttgatt 30816821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University