View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_high_9 (Length: 272)
Name: NF9788_high_9
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_high_9 |
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| [»] chr2 (6 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 111 - 272
Target Start/End: Original strand, 30945765 - 30945926
Alignment:
| Q |
111 |
atctctcaattatatgtaaatataatttctactgcaaaagtatacaaaaaatttattatgtatgtttcccacatctttgtaggttttggacacaactaca |
210 |
Q |
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| T |
30945765 |
atctcccaattatatgtaaatataatttctattgcaaaagtatacaaaaaatttattatgtatgtttcccacatctttgtaggttttggacacaactaca |
30945864 |
T |
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| Q |
211 |
tcaatgcggaacaaagcgatgcaagtacacgcgatataagccaagccatagcatcacaaaga |
272 |
Q |
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| T |
30945865 |
tcaatgcggaacaaagcgatgcaagtacacgcgatataagccaagccatagcatcacaaaga |
30945926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 30951415 - 30951673
Alignment:
| Q |
7 |
tggtggtacaaagaaagttctcaaaggatgaatttgataattgacaaattacttttattttttatatcacttatcgacatgtgttttaagtaatctaata |
106 |
Q |
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| T |
30951415 |
tggtggtacaaggaaagttctcaaaggatgaattttttaagtgacaaattactattattttctatagcacttatcgacttgttttacaagtaatctaata |
30951514 |
T |
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| Q |
107 |
cagaatctctcaattatatgtaaatataatttctactgcaaaagtatacaaaaaatttattatgtatgtttcccacatctttgtaggttttggacacaac |
206 |
Q |
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| T |
30951515 |
cagaatcccccaattataggtaaatatagtttatagtgcaaaactataccaaaaatctattatgtatg----ccacacctttgtaggttttggacacaac |
30951610 |
T |
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| Q |
207 |
tacatcaatgcggaacaaagcgatgcaagtacacgcgatataagccaagccatagcatcacaaaga |
272 |
Q |
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| T |
30951611 |
tacatcaatgtgg---aaagcgatgcaagtacacgtgatataagccaagccatagcatcacaaaga |
30951673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 30945693 - 30945767
Alignment:
| Q |
7 |
tggtggtacaaagaaagttctcaaaggatgaatttgataattgacaaattacttttattttttatatcacttatc |
81 |
Q |
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| T |
30945693 |
tggtggtacaaagaaagttctcaaaggatgaatttgataattgacaaattagtattattttttatatcacttatc |
30945767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 28321367 - 28321319
Alignment:
| Q |
186 |
tttgtaggttttggacacaactacatcaatgcggaacaaagcgatgcaa |
234 |
Q |
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| T |
28321367 |
tttgcaggatttggacacaactacatcaatacggaacaaagcaatgcaa |
28321319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 34244960 - 34244917
Alignment:
| Q |
41 |
tgataattgacaaattacttttattttttatatcacttatcgac |
84 |
Q |
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| T |
34244960 |
tgataattgtcaaattactgttattttttatagcacttatcgac |
34244917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 22414162 - 22414114
Alignment:
| Q |
186 |
tttgtaggttttggacacaactacatcaatgcggaacaaagcgatgcaa |
234 |
Q |
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||||||||||||||| | |||| ||||||||||||||||| ||||||| |
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| T |
22414162 |
tttgtaggttttggatatgactagatcaatgcggaacaaagagatgcaa |
22414114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 3342 - 3232
Alignment:
| Q |
164 |
tattatgtatgtttcccacatcttt--gtaggttttggacacaactacatcaatgcggaacaaagcgatgcaagtacacgcgatataagccaagccatag |
261 |
Q |
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|||||||||| |||||| || |||| |||| ||||||||| |||||||||||||||||||||| |||||||||| || || || ||||| ||| | || |
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| T |
3342 |
tattatgtatatttcccgcacctttttgtagcctttggacacgactacatcaatgcggaacaaagtgatgcaagtatactcgctagaagcctagctagag |
3243 |
T |
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| Q |
262 |
catcacaaaga |
272 |
Q |
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| T |
3242 |
catcacaaaga |
3232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 3702859 - 3702759
Alignment:
| Q |
173 |
tgtttcccacatctttg-taggttttggacacaactacatcaatgcggaacaaagcgatgcaagtacacgcgatataagccaagccatagcatcacaaag |
271 |
Q |
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| T |
3702859 |
tgtttctcacatcttttataagttttggacacgattacatcaatgcaaaatagagcgatgcaagcacacacgctagaagccaagccagagcatcacaaag |
3702760 |
T |
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| Q |
272 |
a |
272 |
Q |
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| T |
3702759 |
a |
3702759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 31612334 - 31612270
Alignment:
| Q |
164 |
tattatgtatgtttcccacatcttt--gtaggttttggacacaactacatcaatgcggaacaaag |
226 |
Q |
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|||||||| |||||||||| |||| ||||||||||||||| | |||||||||||| ||||||| |
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| T |
31612334 |
tattatgtcagtttcccacacctttttgtaggttttggacacgaatacatcaatgcgaaacaaag |
31612270 |
T |
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