View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9788_low_1 (Length: 581)
Name: NF9788_low_1
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 148 - 547
Target Start/End: Original strand, 6958266 - 6958665
Alignment:
| Q |
148 |
gaatctatcttactatgatatggtcattttcaagtaacattatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958266 |
gaatctatcttactatgatatggtcattttcaagtaacattatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtt |
6958365 |
T |
|
| Q |
248 |
tctagattacatcaatataagtgttattgtgatttttggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttga |
347 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6958366 |
tctagattacatcagtataagtgttattgtgatttttggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttga |
6958465 |
T |
|
| Q |
348 |
agtttgaattctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgag |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958466 |
agtttgaattctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgag |
6958565 |
T |
|
| Q |
448 |
attcgaaccaatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6958566 |
attcgaaccaatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 6956792 - 6956893
Alignment:
| Q |
16 |
catcaacatctttgccgagtttgattcccatctccattggtatttctggtggattgcagtgtaacgtgtagaatcgtttcaaaacatcttcaccatattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6956792 |
catcaacatctttgccgagtttgattcccatctctattggtatttctggtggattgcagtgtaacgtgtagaatcttttcaaaacatcttcaccatattt |
6956891 |
T |
|
| Q |
116 |
ct |
117 |
Q |
| |
|
|| |
|
|
| T |
6956892 |
ct |
6956893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 427
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
331 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
426 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | |||||||| |||||||| ||||||| |||||| || ||||| | |||||||||||||||||| |
|
|
| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
|
| Q |
427 |
t |
427 |
Q |
| |
|
| |
|
|
| T |
31081843 |
t |
31081843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University