View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_12 (Length: 365)
Name: NF9788_low_12
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 187 - 351
Target Start/End: Original strand, 6330398 - 6330558
Alignment:
| Q |
187 |
gtcatgactcatcccaaccctnnnnnnnttaatttttaataggtatgattacaaagattttataagaaattatatcatatatacatgtgttgcgcgcaac |
286 |
Q |
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| T |
6330398 |
gtcatgactcaccccaaccctaaaaaaattaatttttaataggtatggttagaaagattttataagaaattatattatatata--tgtgttgcgc--aag |
6330493 |
T |
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| Q |
287 |
aatagatagttgcctagcttgttctagcggttaagttggtaaatccaatggccttatgttctgtg |
351 |
Q |
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| T |
6330494 |
aatggataattgcctagcttgttctagcggttaagttggtaaatccaatggccttatgttctgtg |
6330558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 6330173 - 6330274
Alignment:
| Q |
16 |
caataacaaatctaaatgcat--cattattttttaaactagaaaatgagccttttcaacccacttgagttggtcttaggtttgattctctacggtgcaag |
113 |
Q |
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|||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6330173 |
caataacaaatctaaatgtatatcattattttctaaactagaaaatgagccttttcaacccacttgagttggtcttaggttcgattctctacggtgcaag |
6330272 |
T |
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| Q |
114 |
tt |
115 |
Q |
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|| |
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| T |
6330273 |
tt |
6330274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 6330345 - 6330387
Alignment:
| Q |
115 |
tactagtaacttatgaagcatagatacagacacgaaacacaca |
157 |
Q |
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| T |
6330345 |
tactagtaacctatgaagtatagatacagacacgaaacacaca |
6330387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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