View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_13 (Length: 365)
Name: NF9788_low_13
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 27677409 - 27677074
Alignment:
| Q |
14 |
agggtatcaaagtatggtcctgttttcaaaacctccttgctgggttctcctacagtgtttattattggacaacaaggaaataagtttattcttggttcct |
113 |
Q |
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| T |
27677409 |
agggtatcaaagtatggtcctgttttcaaaacctccttgctgggttctcctacagtgtttattattggacaacaaggaaacaagtttattcttggttcct |
27677310 |
T |
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| Q |
114 |
cagatgatgttttgtctgctaacaaaccacctaccattcaaaagatacttggaaagcaaactctagctgaacttataggatcaaggtacgtactcttcaa |
213 |
Q |
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| T |
27677309 |
cagatgatgttttgtctgctaacaaaccccctaccattcaaaagatacttggaaagcaaactctagctgaacttataggatcaaggtagatactcttcaa |
27677210 |
T |
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| Q |
214 |
ctcttaatcattgttgcaacttaaattgttgttttaaaatttcaaatagtttagatagcttgtccaaagtgaaatggtattttaagggggatacttaaat |
313 |
Q |
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| T |
27677209 |
ctcttaatcattgttgcaacttaaattgttgttttaaaatttcaaatagtttagatagcttgtccaaagtgaaatggtattttaagggggataattaaat |
27677110 |
T |
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| Q |
314 |
ggcaccatttaaacaatatttcattgtggttaaaat |
349 |
Q |
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| T |
27677109 |
ggcatcatttaaacaatatttcattgtggttaaaat |
27677074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 27669944 - 27670120
Alignment:
| Q |
26 |
tatggtcctgttttcaaaacctccttgctgggttctcctacagtgtttattattggacaacaaggaaataagtttattcttggttcctcagatgatgttt |
125 |
Q |
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| T |
27669944 |
tatggtcctgtcttcaaaacttccatattgggttcccctactgtgtttattattggtcaacagggaaacaagtttgttcttggttcctcacatgatgttc |
27670043 |
T |
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| Q |
126 |
tgtctgctaacaaaccacctaccattcaaaagatacttggaaagcaaactctagctgaacttataggatcaaggtac |
202 |
Q |
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| T |
27670044 |
tttctagtaagaaacctccaacacttcaaaggatttttggaaaacaaagcctacttgaactcacaggatcaaggtac |
27670120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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