View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9788_low_15 (Length: 348)

Name: NF9788_low_15
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9788_low_15
NF9788_low_15
[»] chr2 (20 HSPs)
chr2 (58-346)||(16443265-16443554)
chr2 (80-259)||(13494996-13495176)
chr2 (67-161)||(19089406-19089497)
chr2 (269-337)||(26195427-26195495)
chr2 (58-138)||(17319660-17319740)
chr2 (75-142)||(26538905-26538973)
chr2 (67-133)||(5836227-5836293)
chr2 (67-124)||(24053447-24053503)
chr2 (67-120)||(25445221-25445273)
chr2 (58-133)||(636216-636291)
chr2 (58-133)||(22430282-22430357)
chr2 (58-133)||(22435876-22435951)
chr2 (58-133)||(43776925-43777000)
chr2 (64-113)||(11311989-11312037)
chr2 (67-124)||(19437696-19437752)
chr2 (80-136)||(19912219-19912275)
chr2 (58-133)||(7910113-7910188)
chr2 (58-133)||(14898717-14898792)
chr2 (250-333)||(19089588-19089672)
chr2 (266-337)||(25232094-25232166)
[»] chr4 (12 HSPs)
chr4 (67-319)||(13999940-14000192)
chr4 (125-319)||(13994694-13994888)
chr4 (67-124)||(23200470-23200526)
chr4 (265-337)||(24857847-24857919)
chr4 (67-124)||(30673858-30673914)
chr4 (269-345)||(12753674-12753752)
chr4 (58-133)||(20192742-20192817)
chr4 (80-141)||(12435487-12435549)
chr4 (80-141)||(29333593-29333655)
chr4 (80-141)||(42411063-42411125)
chr4 (67-124)||(12659350-12659406)
chr4 (67-124)||(16325877-16325933)
[»] chr3 (12 HSPs)
chr3 (125-319)||(13921525-13921719)
chr3 (64-137)||(44122175-44122247)
chr3 (67-124)||(49486883-49486939)
chr3 (58-133)||(13990766-13990841)
chr3 (58-133)||(23344310-23344385)
chr3 (58-133)||(40800788-40800863)
chr3 (67-133)||(2168801-2168867)
chr3 (67-133)||(9724773-9724839)
chr3 (67-133)||(12990873-12990939)
chr3 (67-124)||(21883368-21883424)
chr3 (80-124)||(2978394-2978438)
chr3 (266-329)||(13639700-13639764)
[»] chr8 (13 HSPs)
chr8 (125-277)||(30735218-30735370)
chr8 (67-134)||(17909690-17909757)
chr8 (266-336)||(29185541-29185612)
chr8 (67-134)||(10738912-10738979)
chr8 (67-133)||(23429477-23429543)
chr8 (224-313)||(17909845-17909935)
chr8 (80-141)||(21247632-21247694)
chr8 (80-141)||(27679765-27679827)
chr8 (80-141)||(37209668-37209730)
chr8 (269-337)||(23429682-23429750)
chr8 (58-133)||(12756312-12756387)
chr8 (80-124)||(30714374-30714418)
chr8 (80-124)||(30722151-30722195)
[»] chr1 (22 HSPs)
chr1 (125-319)||(11323668-11323859)
chr1 (125-319)||(11481689-11481880)
chr1 (265-345)||(3850391-3850471)
chr1 (64-134)||(26028630-26028700)
chr1 (266-337)||(27317701-27317772)
chr1 (266-335)||(11444037-11444107)
chr1 (276-333)||(15552973-15553030)
chr1 (265-329)||(11441674-11441739)
chr1 (67-124)||(31093106-31093162)
chr1 (68-124)||(11660122-11660177)
chr1 (220-303)||(14762264-14762348)
chr1 (266-333)||(18640507-18640575)
chr1 (58-133)||(27179120-27179195)
chr1 (67-133)||(33493087-33493153)
chr1 (64-133)||(145539-145608)
chr1 (80-141)||(28519231-28519293)
chr1 (80-133)||(29547696-29547750)
chr1 (67-124)||(18535138-18535194)
chr1 (296-333)||(18643224-18643261)
chr1 (67-124)||(37356892-37356948)
chr1 (83-138)||(16168721-16168777)
chr1 (266-313)||(29530196-29530244)
[»] chr6 (10 HSPs)
chr6 (67-136)||(17270335-17270404)
chr6 (133-335)||(17190636-17190839)
chr6 (63-133)||(19441316-19441386)
chr6 (228-337)||(21143036-21143147)
chr6 (269-337)||(25398213-25398281)
chr6 (58-133)||(14855871-14855946)
chr6 (266-337)||(19441143-19441215)
chr6 (252-337)||(17275098-17275184)
chr6 (80-141)||(23427438-23427500)
chr6 (64-112)||(25397856-25397903)
[»] chr5 (16 HSPs)
chr5 (266-335)||(24213295-24213365)
chr5 (67-134)||(17945692-17945759)
chr5 (67-123)||(34648091-34648146)
chr5 (276-329)||(24228294-24228348)
chr5 (67-124)||(16675508-16675564)
chr5 (269-337)||(18079959-18080027)
chr5 (67-124)||(21171346-21171402)
chr5 (67-124)||(35264699-35264755)
chr5 (67-134)||(19699287-19699354)
chr5 (58-133)||(28367131-28367206)
chr5 (266-332)||(31109008-31109074)
chr5 (282-335)||(40786726-40786780)
chr5 (67-124)||(23053538-23053594)
chr5 (67-119)||(18080116-18080167)
chr5 (68-124)||(24213475-24213530)
chr5 (80-124)||(25365553-25365597)
[»] chr7 (14 HSPs)
chr7 (194-314)||(17188404-17188524)
chr7 (58-133)||(558022-558097)
chr7 (67-133)||(25498997-25499063)
chr7 (67-124)||(8248054-8248110)
chr7 (296-345)||(23818687-23818736)
chr7 (58-133)||(32148411-32148486)
chr7 (250-313)||(34226055-34226119)
chr7 (250-313)||(34230183-34230247)
chr7 (276-346)||(20125321-20125391)
chr7 (67-124)||(340452-340508)
chr7 (80-162)||(20362606-20362686)
chr7 (269-337)||(42937580-42937648)
chr7 (80-124)||(29185482-29185526)
chr7 (58-133)||(42208827-42208902)
[»] scaffold0102 (1 HSPs)
scaffold0102 (65-124)||(13967-14025)
[»] scaffold0014 (1 HSPs)
scaffold0014 (67-124)||(111819-111875)
[»] scaffold0124 (1 HSPs)
scaffold0124 (58-133)||(39377-39451)
[»] scaffold0004 (1 HSPs)
scaffold0004 (58-133)||(345821-345896)
[»] scaffold0066 (1 HSPs)
scaffold0066 (63-133)||(11534-11604)
[»] scaffold0214 (1 HSPs)
scaffold0214 (250-315)||(29533-29599)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 346
Target Start/End: Complemental strand, 16443554 - 16443265
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatattagcatgatgtggatg 156  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  16443554 cccaccggatttttctctagtaaaggttttaatgagacatatctttcatggacatccaagggggagtgttatgaataataatattagcatgatctggatg 16443455  T
Q  157 tccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccatttacatttagtcctataactcttcgtacacttgta 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  16443454 tccattgatcctaagctttctatattccctaactcccatgagtaaatggctttagtcattaccatttacatttagtcctatgactcttcatacacttgta 16443355  T
Q  257 acttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaagtaatacaatatactctctgcttctcca 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||    
T  16443354 acttacaatatttgtgtcttataaataggacctatatgcaatgtaaaatacacactcatgaagtaatacaatatactctcttgttctcca 16443265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 13494996 - 13495176
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatattagcatgatgtggatgtccattgatcc-taagctttct 177  Q
    ||||||||||||  |||||||||||||| ||||||||  |||||| |||||||||||| |||||  || || |||||||||||| |||| ||||||||||    
T  13494996 aaggttttaatgatgcatatccttcatgaacatctaaaagggagtattatgaataatattattaatataatatggatgtccatt-atccataagctttct 13495094  T
Q  178 atattccctaacccccatgagtaaatggctttagtcattaccatttacatttagtcctataactc-ttcgtacacttgtaact 259  Q
    ||||||| |||| || |||||| |||| ||||| |||||||  ||  ||||||||||||| | || ||| |||||||||||||    
T  13495095 atattccttaactcctatgagt-aatgactttactcattacatttggcatttagtcctatgagtctttcatacacttgtaact 13495176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 19089406 - 19089497
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatattagcatgatgtggatgtccat 161  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||| ||| |||||| |||||||||||| ||||   |||||||||||||||||    
T  19089406 tttttctctagtaa-ggttttaatgaggcatatctttcatggacatccaagagggagtgttatgaataatattatt---atgatgtggatgtccat 19089497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 26195427 - 26195495
Alignment:
Q  269 tgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| |||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||||    
T  26195427 tgtgtcctataaataggacctatattgcaatgtaatat-cacacttatgaagtaatacaatatactctct 26195495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 17319740 - 17319660
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataat 138  Q
    |||||||  ||||||||||| || |||||||||  ||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  17319740 cccaccgagtttttctctagcaa-ggttttaattaggcatatccttgatggacatccaagggggagtgttatgaataataat 17319660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 26538973 - 26538905
Alignment:
Q  75 tagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatta 142  Q
    ||||||||||||||||| | ||||||||||||||||||| || ||| ||| |||||||||||| |||||    
T  26538973 tagtaaaggttttaatgagacatatccttcatggacatccaaagggaagtgttatgaataatattatta 26538905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 5836293 - 5836227
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  5836293 tttttctctagtaa-ggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaata 5836227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 24053503 - 24053447
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||||||||||||||    
T  24053503 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatctaagggggagt 24053447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 25445273 - 25445221
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggg 120  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||||||||||    
T  25445273 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatctaagggg 25445221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 636216 - 636291
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  636216 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22430282 - 22430357
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  22430282 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 22430357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22435876 - 22435951
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  22435876 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 22435951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 43776925 - 43777000
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  43776925 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 43777000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11311989 - 11312037
Alignment:
Q  64 ggatttttctctagtaaaggttttaatggggcatatccttcatggacatc 113  Q
    ||||||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  11311989 ggatttttctctagtaa-ggttttaatgaggcacatccttcgtggacatc 11312037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 19437752 - 19437696
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| ||||||||||    
T  19437752 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatccaagggggagt 19437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 19912219 - 19912275
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataata 136  Q
    |||||||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||    
T  19912219 aaggttttaatgaggcatatcc-taatggacatccaagggggagtgttatgaataata 19912275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 7910188 - 7910113
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| | |||||||   ||||||||| |||||||||| |||||||||    
T  7910188 cccactgggtttttctctagtaa-ggttttaatgagacatatccgagatggacatccaagggggagtgttatgaata 7910113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 14898717 - 14898792
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| ||||||| |   ||||||||| |||||||||| |||||||||    
T  14898717 cccactgggtttttctctagtaa-ggttttaatgaggcatattcgagatggacatccaagggggagtgttatgaata 14898792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 19089588 - 19089672
Alignment:
Q  250 acttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatatact 333  Q
    |||| |||||||| | ||||||||| |||||||||||| |||| | |||||||||| || |||||  |||| |||||| ||||||    
T  19089588 acttttaacttaccacatttgtgtcatataaataggacttatatttcaatgtaaagaacgcacttgagaagcaatacactatact 19089672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 25232094 - 25232166
Alignment:
Q  266 atttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||||||  ||||||||||| |||| || ||||||||| ||||||||  |||| ||||||||| |||||||    
T  25232094 atttgtgtcccataaataggacatatattgtaatgtaaagaacacacttgagaagcaatacaatacactctct 25232166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 67 - 319
Target Start/End: Original strand, 13999940 - 14000192
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatattagcatgatgtggatgtccattgat 165  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  13999940 tttttctctactaaaggttttaatgaggcatatccttcatagacatccaagggggagtgttatgaataataatattagcatgatgtggatgtccattgtt 14000039  T
Q  166 cctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccatttacatttagtcctataactcttcgtacacttgtaacttacaat 265  Q
    |||||||||||||||| |||||||    ||||||||||||||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||    
T  14000040 cctaagctttctatatgccctaacttatatgagtaaatggctttagtcattaatatttacatttagtcctatgactcttcatacacttgtaacttacaat 14000139  T
Q  266 atttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaag 319  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14000140 atttatgtcttataaataggacctatatgcaatgt-aagtacacacttgtgaag 14000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 13994694 - 13994888
Alignment:
Q  125 ttatgaataataatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccattta 224  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  13994694 ttatgaataataatattagcatgatgtcgatgtccattgtttctaagctttctatattccctaacttctatgagtaaatggctttagtcattaccattta 13994793  T
Q  225 catttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaag 319  Q
    ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13994794 catttagtcctatgactcttcgtacacttgtaacttaaaatgtttgtgtcttataaataggacctatatgcaatgtaaagtacacacttgtgaag 13994888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 23200470 - 23200526
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||||||||||||||    
T  23200470 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatctaagggggagt 23200526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 24857919 - 24857847
Alignment:
Q  265 tatttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||||||| |||||||||||  |||| |||||||||||||  ||||||| ||||||||||||||||||||||    
T  24857919 tatttgtgtcctataaataggatttataatgcaatgtaaagtt-acacttaagaagtaatacaatatactctct 24857847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 30673914 - 30673858
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  30673914 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 30673858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 12753752 - 12753674
Alignment:
Q  269 tgtgtcttataaataggacctatatg-caatgtaaagtacacacttatgaagta--atacaatatactctctgcttctcc 345  Q
    |||||||||||||||||||||| ||  |||||||| | |||||||| |||||||  ||||||||||||||||| ||||||    
T  12753752 tgtgtcttataaataggacctacattacaatgtaatg-acacacttgtgaagtataatacaatatactctctggttctcc 12753674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 20192817 - 20192742
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  20192817 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgatatggacatccaagggggagtgttatgaata 20192742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12435549 - 12435487
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  12435549 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 12435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 29333593 - 29333655
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  29333593 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 29333655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 42411063 - 42411125
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  42411063 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 42411125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 12659406 - 12659350
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| ||||||||||    
T  12659406 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatccaagggggagt 12659350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 16325933 - 16325877
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| ||||||||||    
T  16325933 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatccaagggggagt 16325877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 13921525 - 13921719
Alignment:
Q  125 ttatgaataataatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccattta 224  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  13921525 ttatgagtaataatattagcatggtgtggatgtccattgttcctaaactttctatattccctaactcctatgagtaaatggatttagtcattaccattta 13921624  T
Q  225 catttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaag 319  Q
    ||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  13921625 catttagtcatatgactcttcatacacttgaaacttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtatacacttgtgaag 13921719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 44122247 - 44122175
Alignment:
Q  64 ggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataa 137  Q
    |||||||||| |||||| |||||||||| ||||||||| | ||||||||| |||||||||| |||||||||||||    
T  44122247 ggatttttctatagtaa-ggttttaatgaggcatatcc-tgatggacatccaagggggagtgttatgaataataa 44122175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 49486939 - 49486883
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  49486939 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 49486883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 13990766 - 13990841
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  13990766 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 13990841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 23344310 - 23344385
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  23344310 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 23344385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 40800863 - 40800788
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  40800863 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 40800788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 2168867 - 2168801
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  2168867 tttttctctagtaa-ggttttaatgaggcatatccgatatggacatccaagggggagtgttatgaata 2168801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 9724839 - 9724773
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  9724839 tttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 9724773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 12990873 - 12990939
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| ||||||||||  |||||||||| ||||||||| |||||| ||| |||||||||    
T  12990873 tttttctctagtaa-ggttttaatgaagcatatccttgatggacatccaaggggaagtgttatgaata 12990939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 21883368 - 21883424
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||| ||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  21883368 tttttctctaataa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 21883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 2978438 - 2978394
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  2978438 aaggttttaatgaggcatatcctcgatggacatccaagggggagt 2978394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 13639700 - 13639764
Alignment:
Q  266 atttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaata 329  Q
    ||||||| |||||| |||||||||||| || ||||||||| |||||||| ||||  |||||||||    
T  13639700 atttgtgccttatacataggacctatattgtaatgtaaagaacacacttgtgaaacaatacaata 13639764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 30735370 - 30735218
Alignment:
Q  125 ttatgaataataatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccattta 224  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  30735370 ttatgaataataatattagcatgatgtggatgtccattgttcctaagctttctatattccctaactcctatgagtaaatggctttagtcattaccattta 30735271  T
Q  225 catttagtcctataactcttcgtacacttgtaacttacaatatttgtgtctta 277  Q
     |||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  30735270 aatttagtcttatgactcttcatacacttgtaacttacaatatttgtgtctta 30735218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 17909690 - 17909757
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataa 134  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||| |||| ||||| ||||||||||    
T  17909690 tttttctctagtaa-ggttttaatgaggcacatccttcatggacatccaaggaggagtgttatgaataa 17909757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 29185612 - 29185541
Alignment:
Q  266 atttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctc 336  Q
    ||||||||| |||||||||||| ||||| | ||||||||  |||||||| ||||||||| ||||||||||||    
T  29185612 atttgtgtcctataaataggacatatattgtaatgtaaaaaacacacttgtgaagtaatgcaatatactctc 29185541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 10738912 - 10738979
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataa 134  Q
    |||||||||| ||| |||||||||| |||| |||||||||||||||  |||||||||| ||||||||||    
T  10738912 tttttctctaataa-ggttttaatgaggcacatccttcatggacattcaagggggagtgttatgaataa 10738979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 23429477 - 23429543
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||| ||||||||| |||||||||| || |||||||| ||||||||| |||||||||| |||||||||    
T  23429477 ttttactctagtaa-ggttttaatgagggatatccttgatggacatccaagggggagtgttatgaata 23429543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 17909845 - 17909935
Alignment:
Q  224 acatttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatat-gcaatgtaaagtacacactt 313  Q
    ||| ||||||||||  |||||| |  ||||||||||||| | || |||||| |||||||||||| |||||  |||||||||| ||||||||    
T  17909845 acacttagtcctatggctcttcatgtacttgtaacttaccacatgtgtgtcctataaataggacttatatctcaatgtaaagaacacactt 17909935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 21247632 - 21247694
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  21247632 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 21247694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 27679827 - 27679765
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  27679827 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 27679765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 37209668 - 37209730
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  37209668 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 37209730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 23429682 - 23429750
Alignment:
Q  269 tgtgtcttataaataggacctatatg-caatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| ||||||||||||||| ||  |||||||| | |||||||| |||||||| ||||||||||||||    
T  23429682 tgtgtcctataaataggacctacattacaatgtaatg-acacacttgtgaagtaaaacaatatactctct 23429750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 12756387 - 12756312
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| | |||||||   ||||||||| |||||||||| |||||||||    
T  12756387 cccactgggtttttctctagtaa-ggttttaatgagacatatccgagatggacatccaagggggagtgttatgaata 12756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 30714418 - 30714374
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  30714418 aaggttttaatgaggcatatcctcaatggacatccaagggggagt 30714374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 30722195 - 30722151
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  30722195 aaggttttaatgaggcatatcctcaatggacatccaagggggagt 30722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 11323859 - 11323668
Alignment:
Q  125 ttatgaataa-taatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccattt 223  Q
    |||||||||| | |||||||||||||  |||||||||||| ||||||||||||||||||||||||| |  |||     ||| ||||| ||||||| ||||    
T  11323859 ttatgaataaatgatattagcatgatacggatgtccattgttcctaagctttctatattccctaactcttatgg----atgactttaatcattacaattt 11323764  T
Q  224 acatttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaag 319  Q
    | |||||||||||| ||||||| |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| || |||||    
T  11323763 atatttagtcctatgactcttcatttacttgtaacttacaatatttatgtcttataaataggatctatatgcaatgtaaaatacacatttgtgaag 11323668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 11481880 - 11481689
Alignment:
Q  125 ttatgaataa-taatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccattt 223  Q
    |||||||||| | |||||||||||||  |||||||||||| ||||||||||||||||||||||||| |  |||     ||| ||||| ||||||| ||||    
T  11481880 ttatgaataaatgatattagcatgatacggatgtccattgttcctaagctttctatattccctaactcttatgg----atgactttaatcattacaattt 11481785  T
Q  224 acatttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatatgcaatgtaaagtacacacttatgaag 319  Q
    | |||||||||||| ||||||| |  |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| || |||||    
T  11481784 atatttagtcctatgactcttcatttacttgtaacttacaatatttatgtcttataaataggatctatatgcaatgtaaaatacacatttgtgaag 11481689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 3850471 - 3850391
Alignment:
Q  265 tatttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctctgcttctcc 345  Q
    |||||||||| ||||||||| | |||||| ||||| ||||| |||||||||||||||||| ||||||||||||| |||||||    
T  3850471 tatttgtgtcctataaatagaatctatattgcaatataaag-acacacttatgaagtaatgcaatatactctcttcttctcc 3850391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 26028630 - 26028700
Alignment:
Q  64 ggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataa 134  Q
    ||||||||||||| ||| |||||||||| |||| |||||||||||||||| |||||||||| ||||||||||    
T  26028630 ggatttttctctaataa-ggttttaatgaggcacatccttcatggacatccaagggggagtattatgaataa 26028700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 27317701 - 27317772
Alignment:
Q  266 atttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    ||||||||| |||||||| ||||||||| | ||||||||| ||||||||  ||||||||||||||||||||||    
T  27317701 atttgtgtcctataaatatgacctatattgaaatgtaaag-acacacttgagaagtaatacaatatactctct 27317772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 11444107 - 11444037
Alignment:
Q  266 atttgtgtcttataaataggacctatatgc-aatgtaaagtacacacttatgaagtaatacaatatactct 335  Q
    ||||||||| |||||||||||| |||||   ||||| || ||||||||| |||||||||||||||||||||    
T  11444107 atttgtgtcctataaataggacttatattataatgtgaattacacacttgtgaagtaatacaatatactct 11444037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 15552973 - 15553030
Alignment:
Q  276 tataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatact 333  Q
    |||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  15552973 tataaataggacctatattgcaatgtaatg-acacacttgtgaagtaatacaatatact 15553030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 11441739 - 11441674
Alignment:
Q  265 tatttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaata 329  Q
    |||||||||| |||||||| ||||||||| | ||||| || ||||||||||||| |||||||||||    
T  11441739 tatttgtgtcctataaatatgacctatattgtaatgtgaattacacacttatgaggtaatacaata 11441674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 31093162 - 31093106
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  31093162 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 31093106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 11660122 - 11660177
Alignment:
Q  68 ttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    ||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  11660122 ttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 11660177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 14762348 - 14762264
Alignment:
Q  220 atttacatttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaa 303  Q
    |||||||||||||| ||| ||||||| |  ||||||||||||  | ||||||||  |||||||||||| |||| |||||||||||    
T  14762348 atttacatttagtcttatgactcttcatgtacttgtaacttattacatttgtgttctataaataggacttatattgcaatgtaaa 14762264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 18640575 - 18640507
Alignment:
Q  266 atttgtgtcttataaataggacctatatgc-aatgtaaagtacacacttatgaagtaatacaatatact 333  Q
    ||||||||| |||||||||| | |||||   ||||||||| |||||||| |||||||||||||||||||    
T  18640575 atttgtgtcctataaataggtcatatataataatgtaaagaacacacttttgaagtaatacaatatact 18640507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 27179195 - 27179120
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  27179195 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 27179120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 33493153 - 33493087
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  33493153 tttttctctagtaa-ggttttaatgaggcatatccaagatggacatccaagggggagtgttatgaata 33493087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 145608 - 145539
Alignment:
Q  64 ggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||| |||| ||||| |||  ||||||||||| ||||||||| |||||||||| |||||||||    
T  145608 ggatttttctctggtaa-ggtttcaataaggcatatcctttatggacatccaagggggagtgttatgaata 145539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 28519231 - 28519293
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  28519231 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 28519293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 29547696 - 29547750
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  29547696 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaata 29547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 18535194 - 18535138
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||| ||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  18535194 tttttctccagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 18535138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 18643261 - 18643224
Alignment:
Q  296 aatgtaaagtacacacttatgaagtaatacaatatact 333  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  18643261 aatgtaaagaacacacttgtgaagtaatacaatatact 18643224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 37356948 - 37356892
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| ||||||||||    
T  37356948 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatccaagggggagt 37356892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 16168721 - 16168777
Alignment:
Q  83 gttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataat 138  Q
    ||||||||| ||||||||||| ||| ||||| |||| ||||| ||||||||||||||    
T  16168721 gttttaatgaggcatatccttgatgaacatccaaggaggagtgttatgaataataat 16168777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 29530196 - 29530244
Alignment:
Q  266 atttgtgtcttataaataggacctata-tgcaatgtaaagtacacactt 313  Q
    ||||||||| ||||||||||||||||| || ||||||||| ||||||||    
T  29530196 atttgtgtcatataaataggacctatattgtaatgtaaagaacacactt 29530244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 17270404 - 17270335
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataata 136  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  17270404 tttttctctagtaa-ggttttaatgaggcatatccttcatggacatccaagggggagtgttatgaataata 17270335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 335
Target Start/End: Original strand, 17190636 - 17190839
Alignment:
Q  133 aataatattagcatgatgtggatgtccattgatcctaagctttctatattccctaacccccatgagtaaatggctttagtcattaccatttacatttagt 232  Q
    ||||||||||  ||||||||||||||||||   ||||  |||||||||| || ||||  | |||| |||||| ||||| |||||   ||| | ||||| |    
T  17190636 aataatattaatatgatgtggatgtccattttccctagactttctatatcccttaactactatgactaaatgactttattcattcttattgatatttaat 17190735  T
Q  233 cctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatata 331  Q
    || || ||||||| || |||||||| ||||||  ||||  || ||||||||||| ||| | ||| ||||||||  |||||||  |||| |||||||||||    
T  17190736 cccatgactcttcatatacttgtaagttacaacttttgcatcctataaataggatctacattgccatgtaaagggcacacttgagaagaaatacaatata 17190835  T
Q  332 ctct 335  Q
    ||||    
T  17190836 ctct 17190839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 19441386 - 19441316
Alignment:
Q  63 cggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||||||| |||||||||| |||||||| |  ||||||||| |||||||||| |||||||||    
T  19441386 cggatttttctctagtaa-ggttttaatgaggcatatcatcaatggacatccaagggggagtgttatgaata 19441316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 21143036 - 21143147
Alignment:
Q  228 ttagtcctataactcttcgtacacttgtaacttacaata-tttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatac 325  Q
    |||||| ||| |||||||||  | ||||||||||| ||| |||||||   ||||||||||| |||||  |||||||||| |||||||| ||||||||| |    
T  21143036 ttagtcttatgactcttcgtgtatttgtaacttaccatattttgtgttcaataaataggacttatatctcaatgtaaagaacacacttgtgaagtaatgc 21143135  T
Q  326 aatatactctct 337  Q
    || |||||||||    
T  21143136 aacatactctct 21143147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 25398213 - 25398281
Alignment:
Q  269 tgtgtcttataaataggacctatatg-caatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| ||||||||||||||| ||  |||||||| | |||||||| |||||||||||||||||||||||    
T  25398213 tgtgtcctataaataggacctacattacaatgtaatg-acacacttgtgaagtaatacaatatactctct 25398281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 14855871 - 14855946
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  14855871 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 14855946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 19441215 - 19441143
Alignment:
Q  266 atttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    ||||||||| |||||||||||| ||||| | ||| ||| | |||||||| |||||||||| ||||||||||||    
T  19441215 atttgtgtcctataaataggacatatattgtaatataacggacacacttgtgaagtaatataatatactctct 19441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 17275184 - 17275098
Alignment:
Q  252 ttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| ||||||  ||||| || ||||||||||||||| | ||| |||||||| ||||||||  |||| |||||||||| ||||||    
T  17275184 ttgtaagttacaacttttgtatcatataaataggacctacattgccatgtaaagaacacacttgagaagcaatacaatatgctctct 17275098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 23427438 - 23427500
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatatt 141  Q
    |||||||||||| ||||||||||  ||||||||| |||||||||| |||| |||| |||||||    
T  23427438 aaggttttaatgaggcatatcctcgatggacatccaagggggagtgttataaatattaatatt 23427500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 25397856 - 25397903
Alignment:
Q  64 ggatttttctctagtaaaggttttaatggggcatatccttcatggacat 112  Q
    ||||||||| ||||||| |||||||||| ||||||||||| ||||||||    
T  25397856 ggatttttcactagtaa-ggttttaatgaggcatatccttgatggacat 25397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 24213365 - 24213295
Alignment:
Q  266 atttgtgtcttataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactct 335  Q
    ||||||||| |||||||||||||||||| | ||||||||||||| |||| ||||||||||||||| |||||    
T  24213365 atttgtgtcctataaataggacctatattgtaatgtaaagtacatacttgtgaagtaatacaatacactct 24213295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 17945692 - 17945759
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataa 134  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||| |||| ||||| ||||||||||    
T  17945692 tttttctctagtaa-ggttttaatgaggcacatccttcatggacatccaaggaggagtgttatgaataa 17945759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 34648146 - 34648091
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggag 123  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||    
T  34648146 tttttctctag-aaaggttttaatgaggcatatccttgatggacatccaagggggag 34648091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 24228348 - 24228294
Alignment:
Q  276 tataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaata 329  Q
    ||||||||||| |||||| | |||||||||||||||||| |||||||||||||||    
T  24228348 tataaataggatctatattgtaatgtaaagtacacacttgtgaagtaatacaata 24228294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 16675508 - 16675564
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  16675508 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 16675564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 18080027 - 18079959
Alignment:
Q  269 tgtgtcttataaataggacctatatg-caatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| ||||||||||||||| ||  |||||||| | |||||||| |||||||||||||||||||||||    
T  18080027 tgtgtcctataaataggacctacattacaatgtaatg-acacacttgtgaagtaatacaatatactctct 18079959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 21171402 - 21171346
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  21171402 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 21171346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 35264755 - 35264699
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  35264755 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 35264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 19699287 - 19699354
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataa 134  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||  |||||||| | ||||||||||    
T  19699287 tttttctctagtaa-ggttttaatgaggcacatccttcatggacattcaagggggactgttatgaataa 19699354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 28367206 - 28367131
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  28367206 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 28367131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 31109074 - 31109008
Alignment:
Q  266 atttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttatgaagtaatacaatatac 332  Q
    ||||||||| ||||||||||| ||||| |||||||||| | |||||||| |||||||||| |||||||    
T  31109074 atttgtgtcatataaataggatctatattgcaatgtaatg-acacacttgtgaagtaatataatatac 31109008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 40786726 - 40786780
Alignment:
Q  282 taggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactct 335  Q
    |||||||||||| | ||||||||| |||||||| ||||||||||||||| |||||    
T  40786726 taggacctatattgtaatgtaaagaacacacttgtgaagtaatacaatacactct 40786780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 23053594 - 23053538
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| ||||||||||    
T  23053594 tttttctctagtaa-ggttttaatgaggcatatcttcaatggacatccaagggggagt 23053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 18080167 - 18080116
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaaggg 119  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  18080167 ttttactctagtaa-ggttttaatgaggcatatccttgatggacatccaaggg 18080116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 24213530 - 24213475
Alignment:
Q  68 ttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    ||||||||||||| |||||||||| ||||||||||  || |||||| ||||||||||    
T  24213530 ttttctctagtaa-ggttttaatgaggcatatcctcgatagacatccaagggggagt 24213475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 25365597 - 25365553
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  25365597 aaggttttaatgaggcatatcctcgatggacatccaagggggagt 25365553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 17188404 - 17188524
Alignment:
Q  194 atgagtaaatggctttagtcattaccatttacatttagtcctataactcttcgtacacttgtaacttacaatatttgtgtcttataaataggacctatat 293  Q
    ||||||||||| ||||| |||||||  ||   |||||||||||| ||||||  |  |||||||| | |||||||||||||| |||||||| ||| |||||    
T  17188404 atgagtaaatgactttactcattacgtttggaatttagtcctatgactctttatgtacttgtaattcacaatatttgtgtcctataaataagacttatat 17188503  T
Q  294 gcaatgtaaagtacacactta 314  Q
     |||||||||| | |||||||    
T  17188504 acaatgtaaagaatacactta 17188524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 558097 - 558022
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  558097 cccactgggtttttctctagtaa-ggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaata 558022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 25498997 - 25499063
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  25498997 tttttctctagtaa-ggttttaatgaggcatatcctcgatggacatccaagggggagtgttatgaata 25499063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 8248054 - 8248110
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  8248054 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 8248110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 23818736 - 23818687
Alignment:
Q  296 aatgtaaagtacacacttatgaagtaatacaatatactctctgcttctcc 345  Q
    |||||||||||||||||| |||||||| |||||||||| ||| |||||||    
T  23818736 aatgtaaagtacacacttgtgaagtaaaacaatatactttcttcttctcc 23818687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 32148411 - 32148486
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  32148411 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 32148486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 34226119 - 34226055
Alignment:
Q  250 acttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacactt 313  Q
    ||||||||||||| ||||||||||| |||||||||||| |||| | |||||||||  ||||||||    
T  34226119 acttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacactt 34226055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 34230247 - 34230183
Alignment:
Q  250 acttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacactt 313  Q
    ||||||||||||| ||||||||||| |||||||||||| |||| | |||||||||  ||||||||    
T  34230247 acttgtaacttaccatatttgtgtcctataaataggacttatatttcaatgtaaataacacactt 34230183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 20125321 - 20125391
Alignment:
Q  276 tataaataggacctatat-gcaatgtaaagtacacacttatgaagtaatacaatatactctctgcttctcca 346  Q
    |||||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||| ||||  |||||||    
T  20125321 tataaataggacatatattgcaatgtaatg-acacacttgtgaagtaatacaatataccctcttgttctcca 20125391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 340508 - 340452
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||| ||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  340508 tttttctctaataa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 20362606 - 20362686
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaataataatattagcatgatgtggatgtccatt 162  Q
    |||||||||||| ||||||||| | ||||||||| ||  |||||| |||||||| |||||| |   ||||||||||||||||||    
T  20362606 aaggttttaatgaggcatatccatgatggacatccaaaagggagtgttatgaatgataataat---atgatgtggatgtccatt 20362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 42937580 - 42937648
Alignment:
Q  269 tgtgtcttataaataggacctatatg-caatgtaaagtacacacttatgaagtaatacaatatactctct 337  Q
    |||||| ||||||||||||| | ||  |||||||| | |||||||| |||||||||||||||||||||||    
T  42937580 tgtgtcctataaataggaccaacattacaatgtaatg-acacacttttgaagtaatacaatatactctct 42937648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 29185482 - 29185526
Alignment:
Q  80 aaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||    
T  29185482 aaggttttaatgaggcatatcctcgatggacatccaagggggagt 29185526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 42208827 - 42208902
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| ||||||||||||||| |||||||||||| ||||| |||    |||||||| |||||||||| |||||||||    
T  42208827 cccactggatttttctctagt-aaggttttaatgaggcatgtccgaggtggacatccaagggggagtgttatgaata 42208902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 13967 - 14025
Alignment:
Q  65 gatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  13967 gatttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 14025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 111819 - 111875
Alignment:
Q  67 tttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt 124  Q
    |||||||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||    
T  111819 tttttctctagtaa-ggttttaatgaggcatatcctcaatggacatccaagggggagt 111875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 39377 - 39451
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| ||||||||||  ||||||||| |||||||||| |||||||||    
T  39377 cccactgggtttttctctagtaa-ggttttaatgaggcatatcctcgatggacatc-aagggggagtgttatgaata 39451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 345896 - 345821
Alignment:
Q  58 cccaccggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    ||||| || |||||||||||||| |||||||||| |||||||||   ||||||||| |||||||||| |||||||||    
T  345896 cccactgggtttttctctagtaa-ggttttaatgaggcatatccgagatggacatccaagggggagtgttatgaata 345821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 11534 - 11604
Alignment:
Q  63 cggatttttctctagtaaaggttttaatggggcatatccttcatggacatctaagggggagt-ttatgaata 133  Q
    |||||||||||||||| | |||||||||| ||||||||||  ||||||||| ||| |||||| |||||||||    
T  11534 cggatttttctctagt-atggttttaatgaggcatatcctcgatggacatccaagagggagtgttatgaata 11604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 29599 - 29533
Alignment:
Q  250 acttgtaacttacaatatttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttat 315  Q
    ||||||||||||| | ||||||||| |||||||||||| |||| | | |||||||| ||||||||||    
T  29599 acttgtaacttaccacatttgtgtcctataaataggacttatatttctatgtaaagaacacacttat 29533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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