View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_16 (Length: 341)
Name: NF9788_low_16
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 6958374 - 6958665
Alignment:
| Q |
16 |
acatcaatataagtgttattgtgatttttggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgaa |
115 |
Q |
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| T |
6958374 |
acatcagtataagtgttattgtgatttttggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaa |
6958473 |
T |
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| Q |
116 |
ttctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaac |
215 |
Q |
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| T |
6958474 |
ttctgcttgaaaattgtcggtcttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaac |
6958573 |
T |
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| Q |
216 |
caatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
307 |
Q |
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| T |
6958574 |
caatttgacaaagcctgtcaatgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
91 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
186 |
Q |
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| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
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| Q |
187 |
t |
187 |
Q |
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| T |
31081843 |
t |
31081843 |
T |
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