View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_17 (Length: 335)
Name: NF9788_low_17
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 5447003 - 5446694
Alignment:
| Q |
18 |
taacaaagctcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaacttcatactattttcc |
117 |
Q |
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| T |
5447003 |
taacaaagttcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaacttcatactattttcc |
5446904 |
T |
|
| Q |
118 |
aactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctgtcaaaccattctatactttcctccactaccttctcaagtttcttcactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446903 |
aactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctttcaaaccattctatactttcctccactaccttctcaagtttcttcactc |
5446804 |
T |
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| Q |
218 |
tctccctcgtttcataaacataattctcaaacaagttcttcgctttcaccttcttcctaacctcctcatcctctgccttataccgctcggcatccctcat |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446803 |
tctccctcatttcataaacataattctcaaacaagttctttgctttcaccttcttcctaacctcctcatcctctgccttataccgctcggcatccctcat |
5446704 |
T |
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| Q |
318 |
cattcttctc |
327 |
Q |
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|||||||||| |
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| T |
5446703 |
cattcttctc |
5446694 |
T |
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