View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9788_low_18 (Length: 320)

Name: NF9788_low_18
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9788_low_18
NF9788_low_18
[»] chr1 (1 HSPs)
chr1 (16-311)||(2290005-2290302)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 2290302 - 2290005
Alignment:
Q  16 agctctttctagaagttctaatgtataacttctaatccactatggttttggtggtttccaaacatagagtcagtttgatgatttgttgtaaattttaata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2290302 agctctttctagaagttctaatgtataacttctaatccactatggttttggtggtttccaaacatagagtcagtttgatgatttgttgtaaattttaata 2290203  T
Q  116 gtaaattttgcatttgatacattgaaaactaaaatacttaacttttttaataaaatannnnnnnnc--tgtgtacttgaagtaagcacaataagaatact 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |  ||||||||||||||||||| ||||||||||||    
T  2290202 gtaaattttgcatttgatacattgaaaactaaaatacttaacttttttaataaaatattttttttctttgtgtacttgaagtaagcataataagaatact 2290103  T
Q  214 tagctcgagaataagttaagcaattaggattagggttttatgttgtttttgtcatatcttgtgaatgatccccacggtgatatttatagctccctttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2290102 tagctcgagaataagttaagcaattaggattagggttttatgttgtttttgtcatatcttgtgaatgatccccacggtgatatttatagctccctttg 2290005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University