View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_2 (Length: 541)
Name: NF9788_low_2
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 36208941 - 36208549
Alignment:
| Q |
18 |
gtattcttttgatgcaaaaccttattgggactcaagacgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagtt |
117 |
Q |
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| T |
36208941 |
gtattcgtttgatgcaaaaccttattgggactcaagacgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggggtt |
36208842 |
T |
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| Q |
118 |
gatcatacaggaccgtttgaatttgaggccgagactgtgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaaga |
217 |
Q |
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| T |
36208841 |
gatcatacaggaccgtttgagtttgaggccgagactgtgatggatttggatgacttcttgaattatataagatcaaggtcagcttatcagtcatcaaaga |
36208742 |
T |
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| Q |
218 |
ataaaggggttgagcttcttacggatgatgttattaaaaaattcaaacttgcttggggagaagatggaaaaaagattgccaagtttcaagtatatttgag |
317 |
Q |
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| T |
36208741 |
ataaaggggttgagcttcttactgatgatgttattgaaaaattcaaacttgcttggggagaagatggaaaaaagattgccaagtttcaagtatatctgag |
36208642 |
T |
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| Q |
318 |
gattggaagagtaagggatgcttgaaaacatgcaaatgattgtaannnnnnncttatccctttgagggtggtgtgataagaaacatcgtttcttt |
412 |
Q |
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| T |
36208641 |
aattggaagagtaagggatgcttgaaaatatgcaaatgattgta--ctttttcttatccctttgagggtggtgtgacaaggaacatcttttcttt |
36208549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 36205854 - 36205394
Alignment:
| Q |
19 |
tattcttttgatgcaaaaccttattgggactcaa-gacgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagtt |
117 |
Q |
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| T |
36205854 |
tattcttttgatgcaaaacctcattgggacccaaagacgtgaattagttgaggaaaattatgaaaccgttgattttccatttgggcccgttgaaggagtt |
36205755 |
T |
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| Q |
118 |
gatcatacaggaccgtttgaatttgaggccgagactgtgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaaga |
217 |
Q |
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| T |
36205754 |
gatcatacaggaccatttgagtttgtggcagagactgtgatggattttgatgatttcttgacttatataagatcaaggtcatcatatcagacatcaaaga |
36205655 |
T |
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| Q |
218 |
ataaaggggttgagcttcttacggatgatgttattaaaaaattcaaacttgcttggggagaagatggaaaaaagattgccaagtttcaagtatatttgag |
317 |
Q |
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| T |
36205654 |
ataacggggttgaactgcttaaggaggatgttattgaaaattttaaacttgctcgtggtgaagatggccaaaagactgtcaagtttcaagtatatttgag |
36205555 |
T |
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| Q |
318 |
gattggaagagtaagggatgcttgaaaacatgcaaatgattgtaannnnnnncttatccctttgagggtggtgtgataagaaacatcgtttctttaatga |
417 |
Q |
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| T |
36205554 |
aattggaagagtaatggatgcttgaaattatgcaaatgattgta--cttcttcttatccctttgagggtggtgtgataagaaacatcttttctttattga |
36205457 |
T |
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| Q |
418 |
ttaaataagcttgcttcgttgttactacttaaataattaagctggcttttgagaatgattgaaa |
481 |
Q |
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| T |
36205456 |
ttgaataagtttacttcatggatactactt-aataattaaactagctacagagaatgattgaaa |
36205394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 329
Target Start/End: Original strand, 35404773 - 35405076
Alignment:
| Q |
26 |
ttgatgcaaaaccttattgggactcaagacgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagttgatcatac |
125 |
Q |
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||||| |||||||||||||||| ||| || ||||| ||||||| |||||||||| |||||||||||||||||| | ||||| ||||||||||||| |
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| T |
35404773 |
ttgattcaaaaccttattgggattcagcgtgtaaattagttgaggacaattatagaagcattgattttccatttgaggcggtggatggagttgatcatag |
35404872 |
T |
|
| Q |
126 |
aggaccgtttgaatttgaggccgagactgtgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggg |
225 |
Q |
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| T |
35404873 |
aggaccatttgagtttgtgacagagatattgatgagttttgatggtttgttaacttatataaaatcatggtcagcttatcagacagcaaaggagaagggt |
35404972 |
T |
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| Q |
226 |
gttgagcttcttacggatgatgttattaaaaaattcaaacttgcttggggagaagatggaaaaaagattgccaagtttcaagtatatttgaggattggaa |
325 |
Q |
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| T |
35404973 |
gtggagcttcttggtgaggacgtagttgaaaaatttaagcttgcttggggtgaagatggccacaaaactgccaagtttccagtttatctgagaattggaa |
35405072 |
T |
|
| Q |
326 |
gagt |
329 |
Q |
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|||| |
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| T |
35405073 |
gagt |
35405076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 440 - 509
Target Start/End: Complemental strand, 36208546 - 36208477
Alignment:
| Q |
440 |
tactacttaaataattaagctggcttttgagaatgattgaaagcagaaattccggaggagaaaacctagt |
509 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| |
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| T |
36208546 |
tactacttaaataattaagctagcttttgagaatgattgaaagcagatattccagaggagaaaaactagt |
36208477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 329
Target Start/End: Original strand, 35399894 - 35400147
Alignment:
| Q |
76 |
tatagaaacattgattttccatttgatcctgtggaaggagttgatcatacaggaccgtttgaatttgaggccgagactgtgatggatttggatgacttct |
175 |
Q |
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||||||| |||||||||||||||| | | ||||| |||||||||||||||||||| ||||| |||| | | || || | ||| ||| |||| || | |
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| T |
35399894 |
tatagaagcattgattttccatttcaggcagtggatggagttgatcatacaggaccatttgagtttgtgacagaaacattcatgagttttgatggtttgt |
35399993 |
T |
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| Q |
176 |
tgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggggttgagcttcttacggatgatgttattaaaaaattcaaacttgcttgggg |
275 |
Q |
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| | ||||||| |||| |||| ||||||||| || ||||||| || || || ||||||||| || || || || ||||||| || ||||||||||| |
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| T |
35399994 |
taacatatataaaatcatggtcagcttatcagacagcaaagaagaagggtgtggagcttcttggtgaggacgtagttgaaaaatttaagcttgcttgggg |
35400093 |
T |
|
| Q |
276 |
agaagatggaaaaaagattgccaagtttcaagtatatttgaggattggaagagt |
329 |
Q |
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|||||||| | || | ||||||||||| ||| ||| |||| ||||||||||| |
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| T |
35400094 |
tgaagatggccacaaaactgccaagtttccagtttatctgagaattggaagagt |
35400147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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