View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_20 (Length: 313)
Name: NF9788_low_20
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_20 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2842536 - 2842848
Alignment:
| Q |
1 |
atcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattcgta |
100 |
Q |
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| T |
2842536 |
atcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattggta |
2842635 |
T |
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| Q |
101 |
caatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgca |
200 |
Q |
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| T |
2842636 |
caatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgca |
2842735 |
T |
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| Q |
201 |
cctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttccnnnnnnngattctccctttcccttct |
300 |
Q |
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| T |
2842736 |
cctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttct |
2842835 |
T |
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| Q |
301 |
tataagaatctct |
313 |
Q |
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||||||||||||| |
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| T |
2842836 |
tataagaatctct |
2842848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 2838683 - 2838747
Alignment:
| Q |
249 |
gcctataagtttcaagttccttttccnnnnnnngattctccctttcccttcttataagaatctct |
313 |
Q |
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| T |
2838683 |
gcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctct |
2838747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2838510 - 2838590
Alignment:
| Q |
1 |
atcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
81 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || | |||||| |||| |||||| |
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| T |
2838510 |
atcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
136 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
170 |
Q |
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| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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