View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_21 (Length: 312)
Name: NF9788_low_21
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 33601095 - 33600810
Alignment:
| Q |
17 |
atttatatctataaatttttccaaagctttaatattatttatgtaatgtttattgttaaaccttattttcttgtcagaatttatgttttaactttttact |
116 |
Q |
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| T |
33601095 |
atttatatctataaatttttccaaagctttaatattatttatgtaatgtttattgttaaaccttattttcttgtcagaatttatgttttaactttttact |
33600996 |
T |
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| Q |
117 |
aagcttcaatttgttgtttgtaattgaagttaatttttatatgttattatgtgatgtttattgttgaacttattaaatttctttattataactacgaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600995 |
aagcttcaatttgttgtttgtaattgaagttaatttttatatcttattatgtgatgtttattgttgaacttattaaatttctttattataactacgaatt |
33600896 |
T |
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| Q |
217 |
ttctgctagcattttgactgttgtgtgagggataacataatcttttgaatgtttgtaaatttttcacagatgtccttcctcctatg |
302 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600895 |
ttctgcaagcattttgactgttgtgtgagggataacataatcttttgaatgtttgtaaatttttcacagatgtccttcctcctatg |
33600810 |
T |
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