View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9788_low_22 (Length: 292)
Name: NF9788_low_22
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 14283261 - 14282997
Alignment:
| Q |
20 |
aatttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgccatatcaataaaagggtcatcaggtattcatgtgataa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283261 |
aatttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataa |
14283162 |
T |
|
| Q |
120 |
gaatatccgatgtagtagcaacatatccatcggtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283161 |
gaatatccgatgtagtagcaacatatccatcagtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattg |
14283062 |
T |
|
| Q |
220 |
gatgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagatgtacctttgcttc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14283061 |
gatgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagatgtacctttacttc |
14282997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 14305017 - 14304761
Alignment:
| Q |
22 |
tttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgccatatcaataaaagggtcatcaggtattcatgtgataaga |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305017 |
tttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataaga |
14304918 |
T |
|
| Q |
122 |
atatccgatgtagtagcaacatatccatcggtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattgga |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| |
|
|
| T |
14304917 |
atatccgatgtagtagccacatatccatcgatttcaatcgatagaactttgagtccttatgcccattcttcatttttgtccaaaacagggtggttttggc |
14304818 |
T |
|
| Q |
222 |
tgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagatgtacctt |
278 |
Q |
| |
|
|||| ||||| || |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
14304817 |
tgaatcctttactcaataaaggctaccaaacaccccttaaactagaagatgttcctt |
14304761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 14321408 - 14321152
Alignment:
| Q |
22 |
tttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgccatatcaataaaagggtcatcaggtattcatgtgataaga |
121 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
14321408 |
tttgaaaatagatgatatattctcattggttaatcttccattatctgtgttcttttttgtgatatccgtaaaagggtcatcaggtattcacgtgataaga |
14321309 |
T |
|
| Q |
122 |
atatccgatgtagtagcaacatatccatcggtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattgga |
221 |
Q |
| |
|
||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| ||| ||||||| ||||||| |||| ||||| |
|
|
| T |
14321308 |
atatccgatgtagtagcaacatatcggtcaatttcgaccgatagaactttgagtccttatgcttgttcgtcatttttgtctaaaacagggtggttttgga |
14321209 |
T |
|
| Q |
222 |
tgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagatgtacctt |
278 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14321208 |
tgaaccctttactcaataaaggttacaaaacaccccttaaactagaagatgtacctt |
14321152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 25886090 - 25885834
Alignment:
| Q |
22 |
tttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgccatatcaataaaagggtcatcaggtattcatgtgataaga |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| || | |||||||||||| ||||||||||||||| |
|
|
| T |
25886090 |
tttgagaatagatgacatattctcattggttaatcttccattatctttgttcttttttgtcatatccattagagggtcatcagggattcatgtgataaga |
25885991 |
T |
|
| Q |
122 |
atatccgatgtagtagcaacatatccatcggtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattgga |
221 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| | || ||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
25885990 |
atatccgatgtagtagcgacatatacatcggttccaactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttgga |
25885891 |
T |
|
| Q |
222 |
tgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagatgtacctt |
278 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
25885890 |
tgaaccctttgattaataaaggttacaaaactccccttaaactagaagatgttcctt |
25885834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 44349934 - 44349685
Alignment:
| Q |
22 |
tttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgccatatcaataaaagggtcatcaggtattcatgtgataaga |
121 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||| || | |||||||||||| |||| |||||||||| |
|
|
| T |
44349934 |
tttgagaatagatgatatattctcattggttaatcttccattatctgcgttcttttttgtcatatccattagagggtcatcagggattcttgtgataaga |
44349835 |
T |
|
| Q |
122 |
atatccgatgtagtagcaacatatccatcggtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagtttggtattgga |
221 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||| | || ||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
44349834 |
atatccgatgtagtagcgacatatacatcagttccgactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttgga |
44349735 |
T |
|
| Q |
222 |
tgaaccctttgcttaataaaggttaccaaacaccccttaaactagaagat |
271 |
Q |
| |
|
||||||||||| ||||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
44349734 |
tgaaccctttgattaataacggttacaaaactccccttaaactagaagat |
44349685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University