View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_24 (Length: 254)
Name: NF9788_low_24
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 7820923 - 7820668
Alignment:
| Q |
1 |
tctttgttgatttttgacaaactaatgtggcgaacacaaagccaaat---------acctagtattccaatgagtgcatcca-----ttattgtttttct |
86 |
Q |
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| T |
7820923 |
tctttgttgatttttgacaaactgatgtggcgaacacaaagccaaatgacaacacgacctagcattccaatgaatgcattctgcacgtttttgtttttct |
7820824 |
T |
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| Q |
87 |
aatagtaataactcatagatgtgtgtcatccattagattgttcttcattagccacatgataaaaaagttaagagtaactaaaaccaaagttgattatatt |
186 |
Q |
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| T |
7820823 |
aatagtaataactcaaagatgtgt--catccattagatggttcttcattaaccacatgataaaaaagtttagagtaactaaaaccaaagttgattatatt |
7820726 |
T |
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| Q |
187 |
tacaagaatcaaatgcaaaaacaaacctaaaaataaagacggattgaattaccctttg |
244 |
Q |
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| T |
7820725 |
tacaagaatcaaatgcaaaaacaaacctaaaaataaagacggattgaattaccctttg |
7820668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 7810828 - 7810704
Alignment:
| Q |
110 |
tgtcatccattagattgttcttcattagccacatgataaaaaa-gttaagagtaactaaaaccaaagttgattatatttacaagaatcaaatgcaaaaac |
208 |
Q |
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| T |
7810828 |
tgtcatccattagatggatcttcatcagccacatgataaaaaaagttttgaggaactaaaactaaagttcattatatttgcaggaatcaaatgcatgaac |
7810729 |
T |
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| Q |
209 |
aaacctaaaaa-taaagacggattg |
232 |
Q |
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| T |
7810728 |
aaacctaaaaattaaagaaggattg |
7810704 |
T |
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