View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_26 (Length: 252)
Name: NF9788_low_26
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 27171138 - 27171340
Alignment:
| Q |
8 |
gagcagagagtgtccgtcttaaagtcaggtaaatttaaaggaggggaaatgatagagaataagtacaatgtctcctaaaagaaaaatatgagtacatttt |
107 |
Q |
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| T |
27171138 |
gagcacagagtgtccgtcttaaagtcaggtaaatataaaggaggggaaatgatagaaaataagtacaatgtctcctaaaagaaaaatatgagtacatttt |
27171237 |
T |
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| Q |
108 |
atttcggatatcgtcaacnnnnnnnnnnnnnngccttggctcaatgctttcaaaaagaaata-nnnnnnnngttctaatgactccaagttcttttcttta |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27171238 |
atttcggatatcgtcaac----aaaaaaaaaagccttggctcaatgctttcaaaaagaaatatttttttttgttctaatgactccaagttcttttcttta |
27171333 |
T |
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| Q |
207 |
atttgtc |
213 |
Q |
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||||||| |
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| T |
27171334 |
atttgtc |
27171340 |
T |
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