View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_28 (Length: 247)
Name: NF9788_low_28
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43104044 - 43103814
Alignment:
| Q |
1 |
tgttggcaaaatcaggccccgattttgctcatttggcctctgatttttcatgtatgaaaaaggctgaaaaacacaaccaaattcgggccccggattgcac |
100 |
Q |
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| T |
43104044 |
tgttggcaaaatcgggccccgagtttgctcatttggcctctgatttttcatgtatgaaaaaggctgaaaaacacaaccaaattcgggccccggattgcac |
43103945 |
T |
|
| Q |
101 |
aattcagaccccaattttggcagtttccaaaaacttcaattttgtgtcacttttacaataattaagttatcgttcattgtttattttcgtaacttttaag |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| || |||||||| |||||||| || |
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| T |
43103944 |
aattcagaccccaattttggcagttttcaaaaactccaattttgagtcacttttacaataattaggttatcgttcagtgattattttcataacttttcag |
43103845 |
T |
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| Q |
201 |
tgctctcaaaatcct-aagttaataagtttt |
230 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
43103844 |
agctctcaaaatcctcaagttaataagtttt |
43103814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 17897678 - 17897792
Alignment:
| Q |
43 |
atttttcatgtatgaaaaaggctgaaaaacacaaccaaattcgggccccggattgcacaattcagaccccaattttggcagtttccaaaaacttcaattt |
142 |
Q |
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| T |
17897678 |
atttttcacatattaaaaaagctgaaaaacacacccaaaattgggccccggactgcccaattcgggcccga-ttttggcagtttccagaaactccaattt |
17897776 |
T |
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| Q |
143 |
tgtgtcacttttacaa |
158 |
Q |
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| T |
17897777 |
tgagtcactttcacaa |
17897792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 40699114 - 40699012
Alignment:
| Q |
58 |
aaaaggctgaaaa-acacaaccaaattcgggccccggattgcacaattcagaccccaattttggcagtttcca-aaaacttcaattttgtgtcactttta |
155 |
Q |
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||||||||||||| ||||| |||||||||||| ||||| |||||||||| ||| |||||| | |||||||| |||||||||||||| |||||||| | |
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| T |
40699114 |
aaaaggctgaaaacacacatccaaattcgggctccggactgcacaattcgagccctaattttagtagtttccaaaaaacttcaattttaagtcactttca |
40699015 |
T |
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| Q |
156 |
caa |
158 |
Q |
| |
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||| |
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| T |
40699014 |
caa |
40699012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 8173488 - 8173388
Alignment:
| Q |
58 |
aaaaggctgaaaaacacaaccaaattcgggccccggattgcacaattcagaccccaattttggcagtttccaaaaacttcaattttgtgtcacttttaca |
157 |
Q |
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||||||||||||||| || ||||| || ||||||| |||||||||| | |||| |||||||||| || | ||||| |||||||| |||||||||||| |
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| T |
8173488 |
aaaaggctgaaaaactcaggtaaatttggaccccggactgcacaattcgggccccgcttttggcagtatctataaactccaattttgagtcacttttaca |
8173389 |
T |
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| Q |
158 |
a |
158 |
Q |
| |
|
| |
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|
| T |
8173388 |
a |
8173388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 7188424 - 7188284
Alignment:
| Q |
15 |
ggccccgattttgctcatttggcctctgatttttcatgtatgaaaaaggctgaaaaac-acaaccaaattcgggccccggattgcacaattcagacccca |
113 |
Q |
| |
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|||||||||||||||| | || || ||||||||||||||| || | ||||||||||| ||| ||||||||| |||||||| |||| |||| ||||| |
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| T |
7188424 |
ggccccgattttgctcttctg-ccactgatttttcatgtaccaaca-ggctgaaaaaccacagccaaattcgtgccccggacagcaccattcgagcccca |
7188327 |
T |
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| Q |
114 |
attttggcagtttccaaaaacttcaattttgtgtcacttttacaa |
158 |
Q |
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|||||| ||| ||| ||||||||||||||| |||||||| |||| |
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| T |
7188326 |
attttgacagattc--aaaacttcaattttgagtcactttcacaa |
7188284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 31983928 - 31984066
Alignment:
| Q |
4 |
tggcaaaatcaggccccgattttgctcatttggcctctgatttttcatgtatgaaaaaggctgaaaaacacaaccaaattcgggccccggattgcacaat |
103 |
Q |
| |
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||||||||||| ||| ||||||||||| || || | | |||||||| ||| |||||||||||||||||| |||||||||| |||| || | || ||| |
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| T |
31983928 |
tggcaaaatcatgcctcgattttgctc-ttcggtcaccaatttttcacgtaaagaaaaggctgaaaaacacagccaaattcggacccctgactccataat |
31984026 |
T |
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| Q |
104 |
tcagaccccaattttggcagtttccaaaaacttcaatttt |
143 |
Q |
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| | |||| ||||||| |||||||| ||||| ||||||| |
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| T |
31984027 |
ttgggccccgattttggtagtttccagaaactccaatttt |
31984066 |
T |
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