View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_3 (Length: 468)
Name: NF9788_low_3
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 27353021 - 27352574
Alignment:
| Q |
9 |
agcagagaagcacataacaagctgaatctccataacaagagaataagtaataacttgtttactctttttataaaccaattccaacaacggtaaaacaaat |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27353021 |
agcaaagaagcacataacaagctgaatctccataacaagagaataagtaataacttgtttactctttttataaaccaactccaacaacggtaaaacaaat |
27352922 |
T |
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| Q |
109 |
ccatacaaagcagcagaagccaatatcataacaaaaccaatcacataatccttagtagactcaccaacaagtctatctccaccatcagaattcagtgcca |
208 |
Q |
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| T |
27352921 |
ccatacaaagcagcagaagccaatatcataacaaaaccaatcacataatccttagtagactcaccaacaagtctatctccaccatcagaattcagtgcca |
27352822 |
T |
|
| Q |
209 |
aaaccacactcccaagggtcaacnnnnnnntagagttaacagaatacgccgtgaacttatgcttcacaagaaaaaacgcgaaaaccgcggtgaaagctaa |
308 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27352821 |
aaaccacactcccaagggtcaacaaaacaatagagttaacagaatacgccgtgaacttatgcttcacaagaaaaaatgcgaaaaccgcggtgaaagctaa |
27352722 |
T |
|
| Q |
309 |
gtgcgaggattgaattaatgaagaagttgacaccggtagacgctttataccacaggcgtagaggtagtcgtctaaaccggtgaggactccgatgactgcc |
408 |
Q |
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| T |
27352721 |
gtgtgaggattgaattaatgaagaagttgacaccggtagacgctttataccacaggcgtagaggtagtcgtctaaaccggtgaggactccgatgactgcc |
27352622 |
T |
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| Q |
409 |
gaggcgataaacaaagttggtttcattgagacaaagttgttattattg |
456 |
Q |
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| T |
27352621 |
gaggcgataaacaaaggtggtttcattgagacaaagttgttattattg |
27352574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 45725648 - 45725545
Alignment:
| Q |
18 |
gcacataacaagctgaatctccataacaagagaataagtaataacttgtttactctttttataaaccaattccaacaacggtaaaacaaatccatacaaa |
117 |
Q |
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||||||||| | ||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| || | | || ||||||||||||||||| |
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| T |
45725648 |
gcacataacgaactgaaattccataacaagagaataagtgatgggttgtttaatcttcttataaaccaactcaaccgcaggcaaaacaaatccatacaat |
45725549 |
T |
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| Q |
118 |
gcag |
121 |
Q |
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|||| |
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| T |
45725548 |
gcag |
45725545 |
T |
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