View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9788_low_33 (Length: 235)
Name: NF9788_low_33
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 219840 - 219636
Alignment:
| Q |
13 |
cataggttttggcattgatgttaaagtattcaaccttttctgataagcaatcactgccttcacaaactcctacacatttaatattccttaaaatcaaatt |
112 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
219840 |
catacgttttggcactgatgttaaagtattcagccttttctgaaaagcaatcactgccttcacaaactcctacacatttaatattcctcaaaatcaaatt |
219741 |
T |
|
| Q |
113 |
tcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtctagattttaacattgaaatttgagctgtctaatctcgatccaatgactgcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219740 |
tcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtctagattttaacattgaaatttgagctgtctaatctcgatccaatgactgcc |
219641 |
T |
|
| Q |
213 |
tgcct |
217 |
Q |
| |
|
||||| |
|
|
| T |
219640 |
tgcct |
219636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University