View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9788_low_34 (Length: 233)

Name: NF9788_low_34
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9788_low_34
NF9788_low_34
[»] chr3 (2 HSPs)
chr3 (83-223)||(30805051-30805191)
chr3 (83-223)||(30816821-30816961)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 30805191 - 30805051
Alignment:
Q  83 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30805191 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 30805092  T
Q  183 tnnnnnnntacgtggcatagttattagctaaaagtttgatt 223  Q
    |       |||||||||||||||||||||||||||||||||    
T  30805091 taaaaaaatacgtggcatagttattagctaaaagtttgatt 30805051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 30816961 - 30816821
Alignment:
Q  83 tcatggtactacatgcaatttgaagtacacacccacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattggaaaactgca 182  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30816961 tcatggtactgcatgcaatttgaagtacacacgcacttgaaaattgaaagtaagtatggcaaatgtgatgaataggtagcaatagcattgaaaaactgca 30816862  T
Q  183 tnnnnnnntacgtggcatagttattagctaaaagtttgatt 223  Q
    |       ||||||||||||||||||||||| |||||||||    
T  30816861 taaaaaaatacgtggcatagttattagctaagagtttgatt 30816821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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