View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_36 (Length: 229)
Name: NF9788_low_36
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 40352006 - 40352206
Alignment:
| Q |
13 |
cataggacaagagagtagtagtagtacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacctgaacagaagaaatagttcccatg |
112 |
Q |
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| T |
40352006 |
cataggacaagagagtagtagtagtacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacttgaacagaagaaatagttcccatg |
40352105 |
T |
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| Q |
113 |
aaccaactaatcctagaagaatcttcggtttcgaatggcatcttagacctcatcccagaacaccattgaattctcatagcagctttaacagctgaagtct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40352106 |
aaccaactaatcctagaagaatcttcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctcatagcagctttaacagctgaagtct |
40352205 |
T |
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| Q |
213 |
t |
213 |
Q |
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| T |
40352206 |
t |
40352206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 21716407 - 21716235
Alignment:
| Q |
37 |
tacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacctgaacagaagaaatagttcccatgaaccaactaatcctagaagaatct |
136 |
Q |
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|||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||| |
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| T |
21716407 |
tacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacagaagcgattgttcccataaaccaactaatcctagaagagtct |
21716308 |
T |
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| Q |
137 |
tcggtttcgaatggcatcttagacctcatcccagaacaccattgaattctcatagcagctttaacagctgaag |
209 |
Q |
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| T |
21716307 |
tcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaag |
21716235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 51743174 - 51743087
Alignment:
| Q |
18 |
gacaagagagtagtagtagtacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacctgaacagaagaaatagt |
105 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
51743174 |
gacaagagattagtagtagtacctgaagaagtctccaagaggaattaggccaccgaataggatcaacaacctgaacagatgaaatagt |
51743087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 51742247 - 51742162
Alignment:
| Q |
110 |
atgaaccaactaatcctagaagaatcttcggtttcgaatggcatcttagacctcatcccagaacaccattgaattctcatagcagcttt |
198 |
Q |
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|||||||||||||| ||||||||||| || |||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| |
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| T |
51742247 |
atgaaccaactaatactagaagaatcctcagttt--aatggcatcttaaac-tcacaccagaacaccattgaattctcatagcagcttt |
51742162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 42730877 - 42730713
Alignment:
| Q |
37 |
tacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacctgaacagaagaaatagttcccatgaaccaactaatcctagaagaatct |
136 |
Q |
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|||||||||||| | |||||| |||| |||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42730877 |
tacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaatcctagaagaatcc |
42730778 |
T |
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| Q |
137 |
tcggtttcgaatggcatcttagacctcatcccagaacaccattgaattctcatagcagctttaac |
201 |
Q |
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|| ||||| || ||||| || | ||||| |||||||||||||||||| ||| |||| |||||| |
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| T |
42730777 |
tcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaac |
42730713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 28347484 - 28347338
Alignment:
| Q |
37 |
tacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacctgaacagaagaaatagttcccatgaaccaactaatcctagaagaatct |
136 |
Q |
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|||||||||||| |||||||| ||||||||||| ||| |||||||||| |||||| ||| | | ||||||| |||||||| || | ||| ||||| |
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| T |
28347484 |
tacctgaagaagcctccaaggtgaattaggccagagaaggggatcaacaaactgaactccagatacaattcccataaaccaacttattcgagacgaatcc |
28347385 |
T |
|
| Q |
137 |
tcggtttcgaatggcatcttagacctcatcccagaacaccattgaat |
183 |
Q |
| |
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|||||||| || | |||||| | || || |||||||||||| |||| |
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| T |
28347384 |
tcggtttcaaaggccatcttgaatcttattccagaacaccatcgaat |
28347338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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