View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_5 (Length: 440)
Name: NF9788_low_5
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 33632785 - 33632362
Alignment:
| Q |
1 |
caggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632785 |
caggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcact |
33632686 |
T |
|
| Q |
101 |
cttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaaggatgtgaatccgatatattgaacatttatttaattgtcattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33632685 |
cttacaggtataaaaaagctttgtgtaattggttagattttgttggagtactggaaggatgtgaatctgatatattgaacatttatttaattgtcattca |
33632586 |
T |
|
| Q |
201 |
gtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtcttttcttcctacttttatgcgtagtaaatatagcctctcagtac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33632585 |
gtttctatttttcatacattaccattcactgacctgttttctgttttcatcctgtcttttcttcctacttttatgcgtagtaaatatagcctcttagtac |
33632486 |
T |
|
| Q |
301 |
cggatccgactcctcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatatttatatacatatgcataacaaatcaagagtgtgttgga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33632485 |
cggatccgactcctcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatgtttatatacatatgcataacaaatcaagagtgtgttgga |
33632386 |
T |
|
| Q |
401 |
ttatcaaccattgattttcccact |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
33632385 |
ttatcaaccattgattttcccact |
33632362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 29193165 - 29193586
Alignment:
| Q |
1 |
caggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcact |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29193165 |
caggagatcctgaaagatgacaaggagccggaacctttaaatattgactttggttcagaaatttcgtctcagtcagaatttatgtcaacaaacaagcact |
29193264 |
T |
|
| Q |
101 |
cttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaaggatgtgaatccgatatattgaacatttatttaattgtcattca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
29193265 |
cttacaggtataaaaaag----ttgtcattggttagattttgttggagtaatgggaggatgtgaatatgatatattgaccatttatttaattgtcattca |
29193360 |
T |
|
| Q |
201 |
gtttctatttttcatacattaccattcactgacctgttttctgttttcatcc--tgtcttttcttcctacttttatgcgtagtaaatatagcctctcagt |
298 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||| ||||||| |
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|
| T |
29193361 |
gtttctattttttatacactaccattcactgacctgttttctgttttcatcctttgtcttttcctcctactcttatgcggagtaaatatagcttctcagt |
29193460 |
T |
|
| Q |
299 |
accggatccgactcctcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatatttatatacatatgcataacaaatcaagagtgtgttg |
398 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
29193461 |
accggatccgactcttcaaaagtaagtaataccaaccatttatgaacaaatcaatagtagatatttatatacatatacataacaaatcaagagtgtattg |
29193560 |
T |
|
| Q |
399 |
gattatcaaccattgattttcccact |
424 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
29193561 |
gattatcaataattgattttcccact |
29193586 |
T |
|
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