View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_6 (Length: 424)
Name: NF9788_low_6
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 36463786 - 36464180
Alignment:
| Q |
10 |
tgaaaaagctcaaataattgtgagttgagttatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagag |
109 |
Q |
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| T |
36463786 |
tgaaaaagctcaaataattgtgagttgagttatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagag |
36463885 |
T |
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| Q |
110 |
aagtccaacttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaagaatacatacatacatannn |
209 |
Q |
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| T |
36463886 |
aagtccaacttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaagaatacatacatacata--- |
36463982 |
T |
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| Q |
210 |
nnnnnnnnnnnnnntggatatgaaataattaagcatgatatatcagtatttgtttcctactatacctttttcctttgtatattggtattagtatgattat |
309 |
Q |
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| T |
36463983 |
-tgtgtgtgtgtgttggatatggaataattaagcatgatatatcagtatttgtttcctactatacctttttcctttgtatattggtattagtatgattat |
36464081 |
T |
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| Q |
310 |
cattgactgattcccctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgagaaagaattttagcatgacatgtatatatggttacaat |
408 |
Q |
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| T |
36464082 |
cattgactgattcccctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgagaaagaattttagcatgacatgtatatatggttacaat |
36464180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 36472859 - 36473028
Alignment:
| Q |
19 |
tcaaataattgtgagttgagt-tatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagagaagtccaa |
117 |
Q |
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| T |
36472859 |
tcaactaattttgagttgaatatatagctcatgagatatatacttacttttcctatctgtaatgcaagtatcatgatccaaacagagaaaagaagtccaa |
36472958 |
T |
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| Q |
118 |
cttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaa |
189 |
Q |
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| T |
36472959 |
gttccttccaataaacattctcgataacagaaacctaca--cattcatggcattttcatatttcattagaaa |
36473028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 36473272 - 36473402
Alignment:
| Q |
272 |
tacctttttcctttgtatattggtattagtatgattatcattgactgattcccctgcttgaaggtcaagttcaacatcttcaatccttctaatatctgag |
371 |
Q |
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| T |
36473272 |
taccttttttcttggtagattggtattggtttgattttcattgactgattcccctatttgaagatcaagtgtagcatcttctgtc---ctaatatctgag |
36473368 |
T |
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| Q |
372 |
aaagaattttagcatgacatgtatatatggttac |
405 |
Q |
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| T |
36473369 |
gcacaaatatagcatgacatgtatatatggttac |
36473402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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