View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_7 (Length: 408)
Name: NF9788_low_7
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 51455070 - 51454690
Alignment:
| Q |
13 |
cataggatgaagcaagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455070 |
cataggatgaagcaagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtg |
51454971 |
T |
|
| Q |
113 |
catctgacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaa |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454970 |
catctgacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaa |
51454871 |
T |
|
| Q |
213 |
ttacatacatataatgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttg |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454870 |
ttacatacatataatgccaaactcaaacatataaaaatgaacagagtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttg |
51454771 |
T |
|
| Q |
313 |
tggacttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
51454770 |
aggacttgtggaacctcatttttggtggtttccttctccacctttctctttctgccgcgtctctttctcaccggttgaaat |
51454690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 51496553 - 51496350
Alignment:
| Q |
18 |
gatgaagcaagttaaacaaagtaaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatct |
117 |
Q |
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|
|||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
51496553 |
gatgaagcaagttaaacaaagtaaaacataagtaaataaagttgtaccagttgtttaaacatggtatgcaatatcttttccgtttgcattttgtgcatct |
51496454 |
T |
|
| Q |
118 |
gacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattaca |
217 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||| |
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| T |
51496453 |
aacaaccctgcccttgtcatttctctgacattgatggcacatcaaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattaca |
51496354 |
T |
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| Q |
218 |
taca |
221 |
Q |
| |
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|||| |
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|
| T |
51496353 |
taca |
51496350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 51479553 - 51479399
Alignment:
| Q |
40 |
aaaacagaagttaaggaagttgtaccaattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgttt |
139 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
51479553 |
aaaacagaagtgatggaagttgtaccaattgtttaaacaaggtatgcaaaatcttttccgtttgcattttgtgcatctgacaaccctgcccttgtcattt |
51479454 |
T |
|
| Q |
140 |
ctctgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaa |
194 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
51479453 |
ctctgacattgatggcacattaaggactcctctgcaatccactgttaattgaaaa |
51479399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 7996975 - 7996867
Alignment:
| Q |
143 |
tgacattgatgacacattaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaactcaa |
238 |
Q |
| |
|
||||||||||| | | |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |
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| T |
7996975 |
tgacattgatggctcgttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaactcaa |
7996876 |
T |
|
| Q |
239 |
acatataaa |
247 |
Q |
| |
|
|||| |||| |
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|
| T |
7996875 |
acatgtaaa |
7996867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
160 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
221 |
Q |
| |
|
|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 30208328 - 30208464
Alignment:
| Q |
21 |
gaagcaagttaaacaaagtaaaacagaagttaaggaagttgtac----caattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatc |
116 |
Q |
| |
|
|||||| |||||||| | ||||||| |||||||||||||||||| ||| ||| | |||| |||||||| || | |||| | |||||| |||||| |
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| T |
30208328 |
gaagcacgttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttccggtcgcatttcgtgcatt |
30208427 |
T |
|
| Q |
117 |
tgacaaccctgcccttatcgtttctctgacattgatg |
153 |
Q |
| |
|
| |||||||||||||| || ||||| | ||||||||| |
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|
| T |
30208428 |
tcacaaccctgcccttgtcatttcttttacattgatg |
30208464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 27395621 - 27395515
Alignment:
| Q |
86 |
caatatcttctccgtttgcattttgtgcatctgacaaccctgcccttatcgtttctctgacattgatgacacattaaggatccctcttcaatccactgtt |
185 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27395621 |
caatatcttttccgtttgcatttggtgcatctgacaaccctgccactgtcatttctttgacattgatgacacattaaggactcctcttcaatccactgtt |
27395522 |
T |
|
| Q |
186 |
gattgaa |
192 |
Q |
| |
|
|||||| |
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|
| T |
27395521 |
tattgaa |
27395515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 43160133 - 43160058
Alignment:
| Q |
318 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaat |
393 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || |||||||| |
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|
| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaat |
43160058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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