View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9788_low_8 (Length: 407)
Name: NF9788_low_8
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 241 - 396
Target Start/End: Original strand, 31841464 - 31841611
Alignment:
| Q |
241 |
aataaaaagtttaagttgctcctttggcacaaatcacatgtggttgttgccttgttggcatagaaatcaacagataaaatatgtgtcgtgcgtttcttct |
340 |
Q |
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| T |
31841464 |
aataaaaagtttaagttgctcctttggcacaaatcacatgtggttgtta--------gcatagaaatcaacggataaaatatgtgtggtgcgtttcttct |
31841555 |
T |
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| Q |
341 |
ctcaatatttcgtaaagttaagcattatccgtgtttcaattactatattttttctt |
396 |
Q |
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| T |
31841556 |
ctcaatatttcgtaaagttaagcattatccgtgtttcaattacgatattttttctt |
31841611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 31841305 - 31841458
Alignment:
| Q |
18 |
attatacaataaatagtggggaaatattatttcctttggtattggtagcttttttagctctaaataaattattattcttcatgtctcatgtgtgtttcaa |
117 |
Q |
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| T |
31841305 |
attatacaataaatagtggggaaatattatttcctttggtattggtagcttttttagtcctaaataaattattattcttcatgtctcatgtgtgtttcaa |
31841404 |
T |
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| Q |
118 |
gagcagt-------attacgaaaatacacaacaaaaaatgcaagaatatcacat |
164 |
Q |
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| T |
31841405 |
gagcagtgttattccttacgaaaatacacagcaagaaatgcaagaatatcacat |
31841458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 31841496 - 31841577
Alignment:
| Q |
158 |
atcacatgtggttgttggcatataaatcaacggataaaatatgtgtcgtgagtttcttctctcaaatattttgtaaagttaag |
240 |
Q |
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| T |
31841496 |
atcacatgtggttgttagcatagaaatcaacggataaaatatgtgtggtgcgtttcttctctc-aatatttcgtaaagttaag |
31841577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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