View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9788_low_9 (Length: 403)
Name: NF9788_low_9
Description: NF9788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9788_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Complemental strand, 5503626 - 5503243
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5503626 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtagtcaccgacaa |
5503527 |
T |
|
| Q |
103 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503526 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
5503427 |
T |
|
| Q |
203 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503426 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
5503327 |
T |
|
| Q |
303 |
tatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503326 |
tatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
5503243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Complemental strand, 5490813 - 5490444
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5490813 |
ttctgtatagaggagggtcatggaatggatttcttttcaccggtgtttcttggctaagactgcatagagtcttgaatttctcggtagtggtcactgacaa |
5490714 |
T |
|
| Q |
103 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5490713 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgtttacaatggtcagatagg |
5490614 |
T |
|
| Q |
203 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
302 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5490613 |
acacagatttgggaggctatatattctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
5490514 |
T |
|
| Q |
303 |
tatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgg |
372 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5490513 |
tatgtgaatgcttagaaggtttcatgccaaaatttcaactagagtgggattcatcaaattggtctggtgg |
5490444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 5485392 - 5485070
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaa |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5485392 |
ttctatatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtagtcaccgacaa |
5485293 |
T |
|
| Q |
103 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5485292 |
agaattctcttatcaatatgaaactttgaacagttcaattaatactagattggtgctagatccatatggaatgtcacaacgttttcaatggtcagatagg |
5485193 |
T |
|
| Q |
203 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
302 |
Q |
| |
|
||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||| |
|
|
| T |
5485192 |
acacaaatttgggaggctatatcttctcgtcctgcagaccagtgtgatgcttatgacttgtgtggtatcaattctaactgcaatggcgaaagctttccaa |
5485093 |
T |
|
| Q |
303 |
tatgtgaatgcttagaaggtttc |
325 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
5485092 |
tatgtgaatgcttggaaggtttc |
5485070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 5853647 - 5854027
Alignment:
| Q |
6 |
tgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaaaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
5853647 |
tgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagaatgcacagagtcttgaatttctcagtaatgttcactgacaaaga |
5853746 |
T |
|
| Q |
106 |
attctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagataggaca |
205 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||| ||||||| ||| ||||||||||| |||| |||||||||| ||| ||||||||||| |||| |
|
|
| T |
5853747 |
attctcttatcaatatgaaactatgaaccgttcaattattactagaatggagctagatccatccggaaattcacaacgtcttctatggtcagatacgaca |
5853846 |
T |
|
| Q |
206 |
cagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatat |
305 |
Q |
| |
|
|| |||||||||||||||| | ||| |||||||||||| |||||| ||||| |||||| |||| ||| |||||||||||| || ||| |||||||| || |
|
|
| T |
5853847 |
caaatttgggaggctatatcttctcgtcctgcagaccaatgtgataattatgccttgtgcggtatcaactctaactgcaatagtaataactttccaacat |
5853946 |
T |
|
| Q |
306 |
gtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5853947 |
gtgaatgcttggaaggtttcatgccaaaatttcaaccagagtgggagtcatcaaattggtctggtgggtgtgtaaggaaaa |
5854027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 5455637 - 5455253
Alignment:
| Q |
2 |
attctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgaca |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||| |||| |
|
|
| T |
5455637 |
attctgtatagagcagggtcatggaatggatttcttttcactggtgtttcttggcaaagaatgcatagagtcttgaatttctcagtaatgttcactgaca |
5455538 |
T |
|
| Q |
102 |
aagaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatag |
201 |
Q |
| |
|
||||| ||||||| |||||||||| || ||||||||||||| ||||||| |||| ||||| ||| ||||| ||||||||||| |||||| ||||||| |
|
|
| T |
5455537 |
aagaaatctcttacgaatatgaaaccttgaacagttcaattattactagagtggtactagacccaaatggattatcacaacgtttacaatggacagatag |
5455438 |
T |
|
| Q |
202 |
gacacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttcca |
301 |
Q |
| |
|
|||||||| |||||| ||| || || |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | || ||||||| |
|
|
| T |
5455437 |
gacacagaattgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttcca |
5455338 |
T |
|
| Q |
302 |
atatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
5455337 |
atatgtgaatgtttggaaggtttcatgccaaaatttcaaccaaagtgggagtcatcagattggtctggtgggtgtgtaaggaaaa |
5455253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 5526467 - 5526083
Alignment:
| Q |
2 |
attctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgaca |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| | | |||||||| || |||||||||||||||||||||||| ||| |||| |
|
|
| T |
5526467 |
attctgtatagaggaggaccatggaatggatttcttttcagtggttctccctggcaaagtttgtctagagtcttgaatttctcagtagttttcagtgaca |
5526368 |
T |
|
| Q |
102 |
aagaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatag |
201 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || | |||| |||||||||| |||||||||||||||| |
|
|
| T |
5526367 |
aagaagtctcttatcaatatgaaactttgaacagttcaattaatactagactggtgctagattcaaacggaatttcacaacgtcttcaatggtcagatag |
5526268 |
T |
|
| Q |
202 |
gacacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttcca |
301 |
Q |
| |
|
|||||| | |||||||||||||| | ||| ||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
5526267 |
gacacaaacttgggaggctatatcttctcgtcctgtagaccagtgtgatccttatgacacttgtggtatcaattctaattgcaatgttgatatctttcca |
5526168 |
T |
|
| Q |
302 |
atatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||| || ||||||| ||||||||| |
|
|
| T |
5526167 |
atatgtaaatgcttggaaggtttcatgccaaaatttcaaccagagtggcagttgtcaaattgggctagtgggtgtgtaaggaaaa |
5526083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 3 - 386
Target Start/End: Complemental strand, 5447074 - 5446691
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaa |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | |||| ||||| |
|
|
| T |
5447074 |
ttctgtatagagcagggtcatggaatggatttcttttcactggtgtttcttggcaaagagtgcatagagtcatgaatttctctgtaatattcactgacaa |
5446975 |
T |
|
| Q |
103 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
202 |
Q |
| |
|
|||| ||||||| |||||||||||||| | ||||||||||| ||||||| | |||||||| ||| |||||| |||||||| || |||||| |||||| | |
|
|
| T |
5446974 |
agaaatctcttaccaatatgaaactttgagcagttcaattattactagagtcgtgctagacccaaatggaatatcacaacgcttacaatggacagataag |
5446875 |
T |
|
| Q |
203 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
302 |
Q |
| |
|
|||||| ||||| |||| || | ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||| |
|
|
| T |
5446874 |
acacaggattgggcggctttagccaaacgtcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaa |
5446775 |
T |
|
| Q |
303 |
tatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
|||||| ||| || ||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5446774 |
tatgtgtatgtttggaaggtttcaggccaaaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaa |
5446691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 5848350 - 5848716
Alignment:
| Q |
10 |
tagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaaagaattc |
109 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| | | ||||||||||| || | ||||||| |||| | ||| | || ||||||||| || |
|
|
| T |
5848350 |
tagaggagggtcgtggaatggatatcttttcactggagctacttggcaaagaaattataatatattgaattactcatttgtgttaactgacaaagaagtc |
5848449 |
T |
|
| Q |
110 |
tcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagataggacacaga |
209 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||| |||||| | |
|
|
| T |
5848450 |
acttttcaatatgaaactttaaacagtttaattattactagagttgtgctaaatccatatggaacttcacaacgtcttcaatggtcggatcagacacaaa |
5848549 |
T |
|
| Q |
210 |
tttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtga |
309 |
Q |
| |
|
||||||| ||| | | |||||||||||||||||||| ||||| |||||| |||| ||| |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
5848550 |
attgggagattattactaatgctcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtga |
5848649 |
T |
|
| Q |
310 |
atgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgc |
376 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
5848650 |
atgcttggaaggtttcatgccaaaatttcaaccaaaatggaagtcattgaattggtctggtgggtgc |
5848716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 375
Target Start/End: Original strand, 5801940 - 5802318
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttc------ttggcaaagactgcgtagagtcttgaatttctcagtagtggtcac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| | || |||| |||||||| ||||||| ||| |
|
|
| T |
5801940 |
ttctgtatagaggagggtcatggaatggatttcttttcagtagtgtttcctggcattggcaagtaacaaataaagtcatgaatttcacagtagtcttcaa |
5802039 |
T |
|
| Q |
97 |
cgacaaagaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtca |
196 |
Q |
| |
|
|||||||||||||||||| |||| |||| | |||| ||||||| | | ||| || | ||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
5802040 |
tgacaaagaattctcttatgaataccaaaccgtgaacaagtcaattattgcaagaatgatactagatccatacggaaattcacaacgttttctatggtca |
5802139 |
T |
|
| Q |
197 |
gataggacacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatct |
296 |
Q |
| |
|
||||| ||||| |||||| ||||||||| | ||| ||| |||||||||||||||| |||| ||| || |||| ||| || || |||||| | || | |
|
|
| T |
5802140 |
gatagcacacaaatttggaaggctatatcttctcgtccggcagaccagtgtgatgattattccttatgcggtatcaactcaaattgcaatattaatgaat |
5802239 |
T |
|
| Q |
297 |
ttccaatatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtg |
375 |
Q |
| |
|
||||| ||||||||||| | ||||||||| |||| |||| | ||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
5802240 |
ttccagtatgtgaatgcgtggaaggtttcatgccgaaatttgaactacagtgggagtcatcagattggtctggtgggtg |
5802318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 5827613 - 5827986
Alignment:
| Q |
2 |
attctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgaca |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||| ||| ||||||||||||| | | | |||||||||||||| |||| | || | || || | |
|
|
| T |
5827613 |
attctgtatagaggtgggtcatggaatggatatcatttcaatggagtttcttggcaaatagttcatagagtcttgaattactcattcatgttaactgata |
5827712 |
T |
|
| Q |
102 |
aagaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatag |
201 |
Q |
| |
|
||||| | |||||||||||| ||| || ||||||||||| | ||||||||| ||||||||||||||||||| | || | |||||| |||||||||| |
|
|
| T |
5827713 |
aagaagttacttatcaatatgcaacgtttaacagttcaatgattactagatttgtgctagatccatatggaattccaaaccgttttatatggtcagatca |
5827812 |
T |
|
| Q |
202 |
gacacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttcca |
301 |
Q |
| |
|
|| ||| | ||||| |||||||| | || | ||| |||||||||||| | ||||| ||| ||| ||| || || || |||||| | || |||||| |
|
|
| T |
5827813 |
gaaacaaaattgggtggctatatctagtcgtgctgtagaccagtgtgaagattatgccttttgtagtattaactcaaattgcaatattaatgattttcca |
5827912 |
T |
|
| Q |
302 |
atatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtg |
375 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||| || | ||| |||| || ||||||||||||||||| |
|
|
| T |
5827913 |
gtatgtgaatgcttggaaggtttcatgccaaaatttcaaacaaaatggaagtcgtcgaattggtctggtgggtg |
5827986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 375
Target Start/End: Complemental strand, 20344188 - 20343884
Alignment:
| Q |
71 |
gtcttgaatttctcagtagtggtcaccgacaaagaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatg |
170 |
Q |
| |
|
|||||||||| |||| | ||| | || ||||||||| || | ||||||||| |||| | | || || |||| ||||||||| ||||||||| |||||| |
|
|
| T |
20344188 |
gtcttgaattactcatttgtgattactgacaaagaagtcacatatcaatatcaaacgtggaccaatttcattattactagatttgtgctagatacatatg |
20344089 |
T |
|
| Q |
171 |
gaacttcacaacgttttcaatggtcagataggacacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaa |
270 |
Q |
| |
|
||||| ||||||||||| |||||| ||| ||||||| | ||||||||||| | | ||| |||| |||||||||||| | |||| || ||||| | |
|
|
| T |
20344088 |
gaactccacaacgttttatatggtcggattggacacaaaattgggaggctacagctactcgtcctatagaccagtgtgaagagtatgcctgttgtgggat |
20343989 |
T |
|
| Q |
271 |
caattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggt |
370 |
Q |
| |
|
||| |||||||||||| | || | |||||| ||||||||||| ||||||||| |||||||| |||| || | ||| ||||||| |||||||||| |
|
|
| T |
20343988 |
caactctaactgcaatattaatgaatctccaatttgtgaatgcttggaaggtttcacgccaaaatttcaatcaaaatggaagtcatcggattggtctggc |
20343889 |
T |
|
| Q |
371 |
gggtg |
375 |
Q |
| |
|
||||| |
|
|
| T |
20343888 |
gggtg |
20343884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 25808738 - 25809121
Alignment:
| Q |
3 |
ttctgtatagaggagggtcatggaatggatttcttttcactggtgtttcttggcaaagactgcgtagagtcttgaatttctcagtagtggtcaccgacaa |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | |||| ||||| |
|
|
| T |
25808738 |
ttctgtatagagcagggtcatggaatggatttcttttcactggtgtttcttggcaaagagtgcatagagtcatgaatttctctgtaatattcactgacaa |
25808837 |
T |
|
| Q |
103 |
agaattctcttatcaatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagatagg |
202 |
Q |
| |
|
|||| ||||||| |||||||||||||| | ||||||||||| ||||||| | |||||||| ||| |||||| |||||||| || |||||| |||||| | |
|
|
| T |
25808838 |
agaaatctcttaccaatatgaaactttgagcagttcaattattactagagtcgtgctagacccaaatggaatatcacaacgcttacaatggacagataag |
25808937 |
T |
|
| Q |
203 |
acacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaa |
302 |
Q |
| |
|
|||||| ||||| |||| || | ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||| |
|
|
| T |
25808938 |
acacaggattgggcggctttagccaaacgtcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaa |
25809037 |
T |
|
| Q |
303 |
tatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaa |
386 |
Q |
| |
|
|||||| ||| || ||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25809038 |
tatgtgtatgtttggaaggtttcaggccaaaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaa |
25809121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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