View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_high_13 (Length: 241)
Name: NF9789_high_13
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1782535 - 1782313
Alignment:
| Q |
1 |
tgtgatttatagatgttgtgtattgtttttataataaaaaggagaatggttaaattattattaattaaattgatactagtgatcattttaattaaaattg |
100 |
Q |
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| T |
1782535 |
tgtgatttatagatgttgtgtattgtttttataataaaaaggagaatggttaaattattattaattaaattgatactagtgatcattttaattaaaattg |
1782436 |
T |
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| Q |
101 |
ttcaagaaaatttgaactccattcgtttatgtataaaggttaattcttactattgggctgatatgatttacgaacagatcatgtgtatacgaattcattc |
200 |
Q |
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| T |
1782435 |
ttcaagaaaatttgaactccattcgtttatgtataaaggttaattcttactattgggctgatatgatttacgaacagatcatgtgtatacgaattcattc |
1782336 |
T |
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| Q |
201 |
atgtttctaactaacgaatgttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1782335 |
atgtttctaactaacgaatgttt |
1782313 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 25730208 - 25730297
Alignment:
| Q |
11 |
agatgttgtgtattgtttttataataaaaag-gagaatg-gttaaattattattaattaaattgatactagtgatcattttaattaaaat |
98 |
Q |
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| T |
25730208 |
agatgttgtgtattgtttttaaaataaatggtgataattagtgaaattattattaattaaattgacactaatgatcatttcaattaaaat |
25730297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 26279633 - 26279592
Alignment:
| Q |
178 |
atcatgtgtatacgaattcattcatgtttctaactaacgaatg |
220 |
Q |
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| T |
26279633 |
atcacgtgtatacgaattcattcatg-ttctaactaacgaatg |
26279592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 19790190 - 19790279
Alignment:
| Q |
6 |
tttatagatgttgtgtattgtttttataataaaaaggagaatggttaaattattattaattaaattgatactagtgatcattttaattaaaa |
97 |
Q |
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| T |
19790190 |
tttatagacgatgtgtattattttttaaaataaatggagaatggtgaatttatttttaatgaaattgatact--tgatcattttaataaaaa |
19790279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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