View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_high_19 (Length: 207)
Name: NF9789_high_19
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 10196014 - 10195917
Alignment:
| Q |
80 |
ctcttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcata |
177 |
Q |
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| T |
10196014 |
ctcttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagttcggaattctgttaccaacatgtcaggtatataatcata |
10195917 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 10196076 - 10196037
Alignment:
| Q |
18 |
ctcattaatagtgagcttattagtcttaagaaaattctga |
57 |
Q |
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| T |
10196076 |
ctcattaatagtgagcttattagtcttaagaaaattctga |
10196037 |
T |
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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 10651113 - 10651177
Alignment:
| Q |
87 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagttcggaattctgtt |
151 |
Q |
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| T |
10651113 |
agacggttgaaatcaaggtgaaaatggactgtgatggatgtgaaagaagagttaggaattctgtt |
10651177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 31886816 - 31886871
Alignment:
| Q |
83 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
138 |
Q |
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| T |
31886816 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
31886871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 54277 - 54328
Alignment:
| Q |
87 |
agacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
138 |
Q |
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| T |
54277 |
agacggttgagataaaagtgagaatggactgtgatggttgtgaaagaagagt |
54328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 2306629 - 2306684
Alignment:
| Q |
83 |
ttatagacagttgaaataaaggtgaaaatggactgtgatggctgtgaaagaagagt |
138 |
Q |
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| T |
2306629 |
ttatagacagttgagatcaaagtcaaaatggattgtgatgggtgtgaaagaagagt |
2306684 |
T |
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