View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_high_2 (Length: 382)
Name: NF9789_high_2
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45271676 - 45271329
Alignment:
| Q |
20 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaact |
119 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271676 |
accactgagtatggaaagaaaaatggtgccaagatggctcttgatgactgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaact |
45271577 |
T |
|
| Q |
120 |
gtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
219 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271576 |
gtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
45271477 |
T |
|
| Q |
220 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacatt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45271476 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacatt |
45271377 |
T |
|
| Q |
320 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgat |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271376 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgat |
45271329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 45283450 - 45283100
Alignment:
| Q |
20 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
45283450 |
accactgagtatggaaaggaaaatggtgccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagt |
45283351 |
T |
|
| Q |
120 |
gtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |
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| T |
45283350 |
gtgttcatgacaacaacattcaagctgttcatgaccaaatcgctgatatgaggaattggttgagtgcggttatctcttacagacaagcttgtatggaagg |
45283251 |
T |
|
| Q |
220 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
45283250 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacatt |
45283151 |
T |
|
| Q |
320 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgatgtc |
370 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
45283150 |
gtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtc |
45283100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45275209 - 45274862
Alignment:
| Q |
20 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
45275209 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaatt |
45275110 |
T |
|
| Q |
120 |
gtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
219 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||| ||||||||||| |
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| T |
45275109 |
gtcttagtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaagg |
45275010 |
T |
|
| Q |
220 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
45275009 |
atttgacgatgcaaatgatggtgagaagaaaatcaaagagcaattccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacatt |
45274910 |
T |
|
| Q |
320 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgat |
367 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
45274909 |
gtgactggtttgtccgacatcctccagcaattcaacttgaagtttgat |
45274862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45294838 - 45294491
Alignment:
| Q |
20 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaact |
119 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
45294838 |
accactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagt |
45294739 |
T |
|
| Q |
120 |
gtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
219 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
45294738 |
gtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaagg |
45294639 |
T |
|
| Q |
220 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacatt |
319 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
45294638 |
atttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacatt |
45294539 |
T |
|
| Q |
320 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgat |
367 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
45294538 |
gtgactggtttgtccgacatcctccagcaattcaacttgaagtttgat |
45294491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 45303798 - 45303451
Alignment:
| Q |
20 |
accactgagtatggaaaggaaaatggtgccaagatggctcttgatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaacaact |
119 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
45303798 |
accactgagtatggaaaggaagatggtaccaagatggctcttaatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagt |
45303699 |
T |
|
| Q |
120 |
gtgttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaagg |
219 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
45303698 |
gtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaagg |
45303599 |
T |
|
| Q |
220 |
atttgacgatgcaaatgatggtgagaagaagatcaaggagcaattccatgttcagagtttgtacagcgtacaaaaggtcaccgccgttgcccttgacatt |
319 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
45303598 |
atttgacgatgaaaatgacggtgagaagaagatcaaggagcaattagacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacatt |
45303499 |
T |
|
| Q |
320 |
gtgactggtttgtctgacatcctccagcaattcaacttgaactttgat |
367 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
45303498 |
gtgactggtttgtccgacatcctccagcaattcaacttgaagtttgat |
45303451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 38588727 - 38588644
Alignment:
| Q |
122 |
gttcgtgacaacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatctcttacaaacaa |
205 |
Q |
| |
|
||||| || |||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| |||||||| ||| ||||| |
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|
| T |
38588727 |
gttcgcgataacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaa |
38588644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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