View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_high_3 (Length: 365)
Name: NF9789_high_3
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 1946531 - 1946885
Alignment:
| Q |
1 |
ttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaa |
100 |
Q |
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| T |
1946531 |
ttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaa |
1946630 |
T |
|
| Q |
101 |
atatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaac |
200 |
Q |
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| T |
1946631 |
atatatctttatcagttacatttcttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaac |
1946730 |
T |
|
| Q |
201 |
acaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttagga |
300 |
Q |
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| T |
1946731 |
acaccataaatacactgatgttgatttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttagga |
1946830 |
T |
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| Q |
301 |
gttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
355 |
Q |
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| T |
1946831 |
gttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcctttg |
1946885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 24 - 355
Target Start/End: Original strand, 1928442 - 1928773
Alignment:
| Q |
24 |
tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacattt |
123 |
Q |
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| T |
1928442 |
tggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacattt |
1928541 |
T |
|
| Q |
124 |
cttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttg |
223 |
Q |
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||| |||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | | | |
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| T |
1928542 |
ctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatag |
1928641 |
T |
|
| Q |
224 |
atttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgta |
323 |
Q |
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| ||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||| | | |||||| |||||| ||||||| |||||||||||||| |
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| T |
1928642 |
acttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgta |
1928741 |
T |
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| Q |
324 |
acttattgaaattgtatcacattcatcctttg |
355 |
Q |
| |
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| | | ||||||| ||| |||||||| |||| |
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| T |
1928742 |
attcaaagaaattggatcccattcatcttttg |
1928773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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