View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9789_high_7 (Length: 290)

Name: NF9789_high_7
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9789_high_7
NF9789_high_7
[»] chr7 (28 HSPs)
chr7 (153-285)||(49094716-49094850)
chr7 (29-137)||(49095401-49095509)
chr7 (189-286)||(48395245-48395340)
chr7 (192-285)||(7212643-7212738)
chr7 (192-279)||(6892619-6892704)
chr7 (192-277)||(48314349-48314432)
chr7 (190-275)||(2849509-2849594)
chr7 (189-275)||(8352771-8352855)
chr7 (193-279)||(17909036-17909120)
chr7 (197-278)||(24957178-24957257)
chr7 (218-279)||(27306011-27306070)
chr7 (196-285)||(47925341-47925428)
chr7 (197-285)||(22588941-22589027)
chr7 (188-285)||(11503557-11503648)
chr7 (191-279)||(11813344-11813430)
chr7 (192-248)||(6427210-6427266)
chr7 (216-279)||(34820634-34820695)
chr7 (191-239)||(40231730-40231777)
chr7 (195-285)||(42663395-42663483)
chr7 (188-261)||(37385238-37385308)
chr7 (191-248)||(2008873-2008930)
chr7 (192-260)||(34978296-34978362)
chr7 (190-269)||(47448824-47448902)
chr7 (192-279)||(49069249-49069335)
chr7 (181-229)||(2469692-2469740)
chr7 (189-237)||(11751166-11751214)
chr7 (190-261)||(12007190-12007259)
chr7 (192-260)||(36352590-36352658)
[»] chr6 (25 HSPs)
chr6 (195-285)||(13093629-13093719)
chr6 (196-285)||(10840722-10840809)
chr6 (188-277)||(20029257-20029344)
chr6 (189-285)||(38593-38687)
chr6 (188-285)||(33683496-33683591)
chr6 (190-238)||(31883329-31883377)
chr6 (188-278)||(31204797-31204885)
chr6 (191-275)||(25109043-25109124)
chr6 (188-238)||(30423620-30423670)
chr6 (188-260)||(17551384-17551454)
chr6 (242-279)||(34019915-34019952)
chr6 (190-229)||(1196056-1196095)
chr6 (189-248)||(8505789-8505848)
chr6 (187-229)||(12441533-12441575)
chr6 (192-238)||(18065115-18065161)
chr6 (187-229)||(32853178-32853220)
chr6 (188-260)||(2242027-2242097)
chr6 (188-260)||(8645305-8645374)
chr6 (188-233)||(27334854-27334899)
chr6 (188-233)||(27395594-27395639)
chr6 (189-229)||(3180026-3180066)
chr6 (192-248)||(11635550-11635606)
chr6 (191-239)||(22573447-22573495)
chr6 (190-230)||(31517202-31517242)
chr6 (192-248)||(33712320-33712376)
[»] chr8 (23 HSPs)
chr8 (188-279)||(30170715-30170804)
chr8 (190-273)||(13592764-13592845)
chr8 (190-268)||(26629107-26629183)
chr8 (198-285)||(14127250-14127335)
chr8 (196-285)||(37379414-37379501)
chr8 (189-248)||(2730976-2731035)
chr8 (192-247)||(8835886-8835941)
chr8 (192-285)||(4721729-4721820)
chr8 (183-279)||(6511845-6511940)
chr8 (188-249)||(5771890-5771951)
chr8 (192-278)||(21467384-21467466)
chr8 (190-278)||(43066581-43066667)
chr8 (188-248)||(1068602-1068662)
chr8 (188-244)||(5771991-5772047)
chr8 (243-279)||(16585378-16585414)
chr8 (190-229)||(18538384-18538423)
chr8 (188-250)||(36023080-36023142)
chr8 (188-279)||(7678728-7678817)
chr8 (240-277)||(9199921-9199958)
chr8 (244-285)||(26509484-26509525)
chr8 (188-229)||(40413372-40413413)
chr8 (190-230)||(5740807-5740847)
chr8 (192-236)||(21526308-21526352)
[»] chr5 (28 HSPs)
chr5 (192-279)||(8728565-8728652)
chr5 (190-285)||(30838345-30838438)
chr5 (192-279)||(2629818-2629905)
chr5 (192-279)||(4800484-4800573)
chr5 (191-279)||(43057434-43057520)
chr5 (192-277)||(41621916-41621999)
chr5 (189-260)||(611861-611930)
chr5 (192-277)||(26754626-26754709)
chr5 (192-286)||(35570813-35570906)
chr5 (189-279)||(35165676-35165767)
chr5 (191-285)||(844035-844124)
chr5 (190-248)||(11148509-11148567)
chr5 (195-277)||(19645608-19645686)
chr5 (190-246)||(14780438-14780494)
chr5 (192-279)||(29462993-29463081)
chr5 (186-230)||(34428154-34428198)
chr5 (188-230)||(125088-125130)
chr5 (214-268)||(15022237-15022291)
chr5 (186-232)||(19844340-19844386)
chr5 (191-249)||(42446305-42446363)
chr5 (192-233)||(15918020-15918061)
chr5 (192-279)||(19127124-19127209)
chr5 (189-230)||(29803222-29803263)
chr5 (192-248)||(3109602-3109658)
chr5 (192-248)||(4719650-4719706)
chr5 (192-248)||(11306698-11306753)
chr5 (192-279)||(15004710-15004795)
chr5 (189-279)||(32379915-32380003)
[»] chr2 (34 HSPs)
chr2 (192-279)||(25507255-25507342)
chr2 (192-285)||(31629604-31629695)
chr2 (191-278)||(13453942-13454027)
chr2 (188-279)||(22966782-22966871)
chr2 (192-285)||(45376197-45376292)
chr2 (191-285)||(40106608-40106700)
chr2 (190-279)||(9979094-9979181)
chr2 (189-285)||(29472011-29472104)
chr2 (191-275)||(31227542-31227622)
chr2 (188-285)||(28481777-28481870)
chr2 (192-286)||(28544031-28544123)
chr2 (192-248)||(24727605-24727661)
chr2 (191-278)||(43820728-43820813)
chr2 (189-279)||(41661330-41661418)
chr2 (189-248)||(44050012-44050071)
chr2 (191-260)||(7258567-7258634)
chr2 (216-277)||(15610820-15610879)
chr2 (188-238)||(39147761-39147811)
chr2 (188-229)||(19695714-19695755)
chr2 (191-279)||(31415201-31415287)
chr2 (188-279)||(18423747-18423836)
chr2 (188-261)||(27307236-27307306)
chr2 (191-236)||(4036903-4036948)
chr2 (192-268)||(15123933-15124007)
chr2 (190-231)||(29871384-29871425)
chr2 (188-237)||(37731226-37731275)
chr2 (191-248)||(37767781-37767838)
chr2 (186-238)||(5054196-5054248)
chr2 (190-238)||(5427248-5427296)
chr2 (192-232)||(11965793-11965833)
chr2 (192-248)||(15260307-15260363)
chr2 (188-232)||(18531597-18531641)
chr2 (192-244)||(22303203-22303254)
chr2 (193-229)||(39285854-39285890)
[»] chr1 (25 HSPs)
chr1 (190-278)||(35883594-35883680)
chr1 (188-285)||(42577468-42577565)
chr1 (190-272)||(12021929-12022008)
chr1 (193-277)||(1523282-1523364)
chr1 (193-284)||(1922406-1922495)
chr1 (193-277)||(40809498-40809577)
chr1 (189-285)||(49804915-49805009)
chr1 (214-285)||(2279302-2279371)
chr1 (242-276)||(43891758-43891792)
chr1 (187-260)||(48858818-48858889)
chr1 (188-248)||(27742613-27742673)
chr1 (190-229)||(37843466-37843505)
chr1 (190-225)||(39788765-39788800)
chr1 (243-277)||(3904233-3904267)
chr1 (186-279)||(25031704-25031795)
chr1 (190-244)||(33694220-33694274)
chr1 (191-248)||(17082758-17082815)
chr1 (189-238)||(35196130-35196178)
chr1 (189-261)||(48983672-48983742)
chr1 (195-267)||(51231304-51231374)
chr1 (189-229)||(4154589-4154629)
chr1 (190-230)||(16987445-16987485)
chr1 (216-268)||(17777466-17777517)
chr1 (216-279)||(28501471-28501532)
chr1 (192-248)||(49931553-49931609)
[»] chr3 (24 HSPs)
chr3 (190-279)||(47187506-47187593)
chr3 (192-285)||(9326965-9327056)
chr3 (190-279)||(19623238-19623325)
chr3 (195-285)||(11323912-11323998)
chr3 (204-279)||(6976942-6977015)
chr3 (189-275)||(31143267-31143351)
chr3 (188-260)||(50559217-50559287)
chr3 (192-279)||(39284655-39284738)
chr3 (191-271)||(27718780-27718858)
chr3 (194-278)||(41850945-41851027)
chr3 (189-249)||(38017941-38018001)
chr3 (191-279)||(41448165-41448248)
chr3 (190-260)||(48405408-48405476)
chr3 (193-278)||(3282534-3282616)
chr3 (191-260)||(19150324-19150391)
chr3 (188-285)||(39901587-39901681)
chr3 (192-249)||(25188479-25188536)
chr3 (189-230)||(45528975-45529016)
chr3 (192-248)||(5393849-5393905)
chr3 (245-285)||(32622346-32622386)
chr3 (196-248)||(39629854-39629906)
chr3 (188-232)||(41443222-41443266)
chr3 (188-232)||(52454125-52454169)
chr3 (185-233)||(53473603-53473651)
[»] chr4 (41 HSPs)
chr4 (189-277)||(35206165-35206251)
chr4 (195-285)||(13140283-13140369)
chr4 (192-278)||(56215605-56215689)
chr4 (188-285)||(961272-961367)
chr4 (191-279)||(10762488-10762574)
chr4 (240-285)||(44121208-44121253)
chr4 (191-286)||(29963607-29963700)
chr4 (216-279)||(45652665-45652726)
chr4 (190-238)||(50831781-50831829)
chr4 (195-274)||(53190929-53191009)
chr4 (190-275)||(12593602-12593685)
chr4 (224-278)||(1015005-1015061)
chr4 (189-238)||(20760252-20760301)
chr4 (189-238)||(20766643-20766692)
chr4 (189-269)||(42815401-42815479)
chr4 (185-230)||(51296222-51296267)
chr4 (192-279)||(3078894-3078979)
chr4 (190-285)||(35748644-35748737)
chr4 (189-260)||(38864741-38864810)
chr4 (191-276)||(40293239-40293320)
chr4 (193-248)||(17367446-17367501)
chr4 (190-260)||(50890079-50890146)
chr4 (192-261)||(9032780-9032846)
chr4 (245-279)||(32058361-32058395)
chr4 (191-229)||(42915253-42915291)
chr4 (189-261)||(3222986-3223055)
chr4 (192-260)||(5932769-5932835)
chr4 (192-279)||(15596396-15596481)
chr4 (193-285)||(32871809-32871899)
chr4 (186-277)||(33820324-33820413)
chr4 (189-230)||(44272843-44272884)
chr4 (188-233)||(44368232-44368277)
chr4 (188-260)||(54000694-54000764)
chr4 (188-232)||(7632493-7632537)
chr4 (191-231)||(15638160-15638200)
chr4 (189-237)||(25221749-25221797)
chr4 (189-260)||(31221410-31221478)
chr4 (192-248)||(40693638-40693694)
chr4 (190-230)||(42853937-42853977)
chr4 (190-261)||(51255744-51255813)
chr4 (192-279)||(52372179-52372263)
[»] scaffold1625 (1 HSPs)
scaffold1625 (190-285)||(761-854)
[»] scaffold0178 (1 HSPs)
scaffold0178 (204-285)||(11533-11612)
[»] scaffold0128 (1 HSPs)
scaffold0128 (188-260)||(10932-11002)
[»] scaffold0086 (1 HSPs)
scaffold0086 (193-275)||(15824-15901)
[»] scaffold0009 (1 HSPs)
scaffold0009 (191-279)||(49338-49425)
[»] scaffold0036 (1 HSPs)
scaffold0036 (188-260)||(18000-18069)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 49094850 - 49094716
Alignment:
Q  153 ggaaagtgcaaacacgttccaaaaagagtgttatcaaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaa--ccctctctctctc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  49094850 ggaaagtgcaaacacgttccaaaaagagtgttatcaaaagagaaatgatacatgtacaattactttttgacaacttttgtaacaactccctctctctctc 49094751  T
Q  251 atacttacatgtgtttttattctctctctgcttct 285  Q
    | ||||||||||||||||||||||||||| |||||    
T  49094750 acacttacatgtgtttttattctctctcttcttct 49094716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 49095509 - 49095401
Alignment:
Q  29 attctatcactcaacatatgtcacattatttatctatttatcgttggagataatttccaaaatatatttggaattttaatttgtttaatggtttatttat 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49095509 attctatcactcaacatatgtcacattatttatctatttatcgttggagataatttccaaaatatatttggaattttaatttgtgtaatggtttatttat 49095410  T
Q  129 ataacttaa 137  Q
    |||||||||    
T  49095409 ataacttaa 49095401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 48395245 - 48395340
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttctc 286  Q
    |||||||||||||| ||||||||  |||||||||||||||||| |||||  |||||||||| ||||| |||| |||||||||||||||||| ||||||    
T  48395245 aaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaa--ctctctctcttatactcacatatgtttttattctctctcttcttctc 48395340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 7212738 - 7212643
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaacc--ctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| |||||||| |||||||| |||||||||  ||||||   |||||||||||||||| ||||||||||||||||||||||| |||||    
T  7212738 gagaaatgatatttgtacaactactttttcacaacttttaaaacaactttctctctctctcatactcacatgtgtttttattctctctcttcttct 7212643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 6892704 - 6892619
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  ||| ||||||||||| || ||||||||||||||||  ||||| |||||||||||||||||||||||    
T  6892704 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctc--atactcacatgtgtttttattctctctct 6892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 48314432 - 48314349
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    ||||||||||| ||||||||  ||||||| |||||||||  ||||||||||||  ||||||||||||||| |||||||||||||||    
T  48314432 gagaaatgatatttgtacaaccactttttaacaacttttacaacaaccctctc--tctcatacttacatgagtttttattctctct 48314349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 2849594 - 2849509
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| || ||| |||||||||||  ||| ||||||| |||||||||||    
T  2849594 aagagaaatgatatttgtacaattattttttgataacttttgaaataactctctctctctctgactcacatgtgattttattctct 2849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 8352771 - 8352855
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    |||||||||||||| || |||||  |||||||||||| ||||| |||||||   ||||||||||||||||||||| |||||||||||    
T  8352771 aaagagaaatgatatttatacaaccactttttgacaatttttgaaacaacc--atctctctcatacttacatgtgcttttattctct 8352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 17909120 - 17909036
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||| ||| ||||||||| | |||||||||||||||| || |||||||||  |||| |||| |||||||||||||||||||||||    
T  17909120 agaaataatatttgtacaatcattttttgacaacttttgaaataaccctctc--tctcgtactcacatgtgtttttattctctctct 17909036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 24957257 - 24957178
Alignment:
Q  197 atgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    |||||| || |||||  |||||||||||| |||||  |||||||||||||||  ||||| ||||||||||||||||||||||    
T  24957257 atgatatttatacaaccactttttgacaatttttggcacaaccctctctctc--atactcacatgtgtttttattctctctc 24957178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 27306070 - 27306011
Alignment:
Q  218 tttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||||| ||||| ||||||||||  ||||| |||||||||||||||||||||||    
T  27306070 tttgacaacttttgaaacaatcctctctctc--atactcacatgtgtttttattctctctct 27306011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 47925341 - 47925428
Alignment:
Q  196 aatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||| ||||||||  ||| ||| |||||||||| |||||||  |||||||||||||| ||||||||||| ||||||| ||| |||||    
T  47925341 aatgatatttgtacaaccactctttaacaacttttggaacaacc--ctctctctcatactcacatgtgttttaattctctatcttcttct 47925428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 22589027 - 22588941
Alignment:
Q  197 atgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||| ||||||||  | |||||||||||||||| |||||||  | |||||||||||| ||||||| ||||||| ||||||| |||||    
T  22589027 atgatatttgtacaaccattttttgacaacttttgaaacaacc--ccctctctcatactcacatgtgcttttattatctctcttcttct 22588941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 11503648 - 11503557
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||| |||||||| ||||||||  || |||||||||||| || ||||||      ||||||||||| ||||| ||||||||||||||||| |||||    
T  11503648 aaaagaaaaatgatatttgtacaaccacattttgacaacttatggaacaac------tctctcatactcacatgcgtttttattctctctcttcttct 11503557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 11813344 - 11813430
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||| ||| |||||||  |||||||| |||||||||  |||||| || ||||  ||||||| ||||||||||||||| |||||||    
T  11813344 agagaaataatatttgtacacctactttttaacaactttttaaacaacactttctc--tcatactcacatgtgtttttattttctctct 11813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 6427210 - 6427266
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| || |||||  |||||||||||||||||  ||||||||||||||||    
T  6427210 gagaaatgatatttatacaaccactttttgacaacttttagaacaaccctctctctc 6427266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 34820634 - 34820695
Alignment:
Q  216 tttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||| |||||||||| ||||||||||| ||||  ||||| |||| ||||||||||||||||||    
T  34820634 ttttttacaacttttgaaacaaccctctatctc--atactcacatttgtttttattctctctct 34820695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 40231777 - 40231730
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaacc 239  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  40231777 agagaaatgatatttgtacaatta-tttttgacaacttttgtgacaacc 40231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 42663483 - 42663395
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||| || |||||| | |||| ||||||||||| ||||| ||| | ||||  ||||| ||||||||||||||||||| ||| |||||    
T  42663483 aaatgatatttttacaatcaattttcgacaacttttgaaacaatcctatatctc--atactcacatgtgtttttattctctatcttcttct 42663395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 37385308 - 37385238
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    |||||| |||||||| |||||||| || ||||||||||||||||| ||||  || ||||||||||||| |||||    
T  37385308 aaaagataaatgatatttgtacaactattttttgacaacttttgt-acaa--ctttctctctcatactcacatg 37385238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 2008930 - 2008873
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||||| ||| ||||  ||||||||||||||||||| |||||  ||||||||    
T  2008930 agagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctc 2008873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 34978296 - 34978362
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||| ||| ||||| |||||||||||| |||||| ||||  || ||||||||||||| ||||    
T  34978296 gagaaatgatatttgaacaatcactttttgacaatttttgtgacaa--ctttctctctcatactcacat 34978362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 47448824 - 47448902
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgttttta 269  Q
    ||||||||||||| ||| ||||  | ||||||||||||||||| ||||  || ||||||||||||| ||| ||||||||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa--ctttctctctcatactcacattgtgttttta 47448902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 49069249 - 49069335
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  ||||||||||||||||||| | ||   | ||||||||||| ||||| | |||||||||| |||||||    
T  49069249 gagaaatgatatttgtacaaccactttttgacaacttttgtgataa--ttttctctctcatatttacattatgtttttattttctctct 49069335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 2469692 - 2469740
Alignment:
Q  181 tgttatcaaaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||| ||||||||||||||||| ||||||||  ||||| ||||||||||    
T  2469692 tgttttcaaaagagaaatgatatttgtacaaccactttgtgacaacttt 2469740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 11751214 - 11751166
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaa 237  Q
    ||||| |||| ||| ||||||||||| ||| ||||||||||||||||||    
T  11751214 aaagaaaaattatatttgtacaattattttgtgacaacttttgtaacaa 11751166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 12007259 - 12007190
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    ||||||||||||| ||| ||||  | ||||||||||||||||| ||||  || ||||||||||||| |||||    
T  12007259 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa--ctttctctctcatactcacatg 12007190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 36352658 - 36352590
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||  |||||||  | ||| | ||||||||||| |||||  ||||||||||||||||||||    
T  36352658 gagaaatgatatatgtacaaccattttgtaacaacttttgtgacaactttctctctctcatacttacat 36352590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 13093629 - 13093719
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||| ||||||||  |||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||| |||||    
T  13093629 aaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctctctcatactcatatgtgtttttattctctctcttcttct 13093719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 10840722 - 10840809
Alignment:
Q  196 aatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||| ||||||||||| |||||||||||||||| ||||| |  |||||||||||||| || ||||| || ||||||||||| |||||    
T  10840722 aatgatatttgtacaattattttttgacaacttttggaacaatc--ctctctctcatactcacttgtgtattaattctctctcttcttct 10840809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 20029257 - 20029344
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||| |||||||| || |||||  ||||||| |||||||||| ||||||| ||||  ||||||||| |||||||||||||||||||||    
T  20029257 aaaagaaaaatgatatttatacaaccactttttaacaacttttgaaacaaccttctc--tctcatactcacatgtgtttttattctctct 20029344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 38593 - 38687
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||| ||||||||| ||||||||  |  ||||||||||||| | |||||||||||  |||||||||| |||||| |||||||||||||||| |||||    
T  38593 aaagggaaatgatatttgtacaaccaaattttgacaactttggaaacaaccctct--ctctcatactcacatgtatttttattctctctcttcttct 38687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 33683496 - 33683591
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||| |||||||| || || | ||| |||||||||||||||| ||| |||  |||||||||||||| ||||||||||||||| ||| ||| |||||    
T  33683496 aaaagataaatgatatttatatatttattttttgacaacttttgaaactacc--ctctctctcatactcacatgtgtttttattttctttcttcttct 33683591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 31883377 - 31883329
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  31883377 aagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 31883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 31204885 - 31204797
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||||||| || |||||  | ||||||| |||||||| || |||  ||||||||||||| | | ||||||||||||||||||||    
T  31204885 aaaagagaaatgatatttctacaaccattttttgataacttttgaaataac--tctctctctcatattcatatgtgtttttattctctctc 31204797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 25109043 - 25109124
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    ||||||| |||| ||||||| |||  ||||||||||||| |  ||||   ||||||||||||||| |||||||||||||||||||    
T  25109043 agagaaacgatatttgtacagttaaattttgacaactttagagacaa---tctctctctcatactcacatgtgtttttattctct 25109124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 30423670 - 30423620
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||    
T  30423670 aaaagagaaatgatatttgaacaattattttttgacagcttttgtaacaac 30423620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 17551454 - 17551384
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||  | ||||||||||||||||||||||  || ||||||||||||| ||||    
T  17551454 aaaagagaaatgatatttgaacaaccattttttgacaacttttgtaacaa--ctttctctctcatactcacat 17551384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 34019952 - 34019915
Alignment:
Q  242 ctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34019952 ctctctctcatactcacatgtgtttttattctctctct 34019915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 1196056 - 1196095
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  1196056 aagagaaatgatatttgtacaatcactttttgacaacttt 1196095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 8505848 - 8505789
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||||||| ||| ||||| | ||||||||||||||||| |||||  ||||||||    
T  8505848 aaagagaaatgatatttgaacaatcattttttgacaacttttgtgacaactttctctctc 8505789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 12441533 - 12441575
Alignment:
Q  187 caaaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||||||||||||||| |||||||| |||||| ||||||||||    
T  12441533 caaaagagaaatgatatttgtacaactactttgtgacaacttt 12441575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 18065161 - 18065115
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    ||||||||||| ||| ||||| ||||||||||||||||||| |||||    
T  18065161 gagaaatgatatttgaacaatcactttttgacaacttttgtgacaac 18065115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 32853220 - 32853178
Alignment:
Q  187 caaaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||    
T  32853220 caaaagagaaattatatttgtacaatcactttttgacaacttt 32853178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 2242097 - 2242027
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||| | |||||||||| |||||| ||||  || ||||||||||||| ||||    
T  2242097 aaaagagaaatgatatttgaacaatcattttttgacaatttttgtgacaa--ctttctctctcatactcacat 2242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 8645305 - 8645374
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||| ||||  || ||||||||||||| ||||    
T  8645305 aaaagagaaatgatatttgaacaac-actttttgacaacttttgtgacaa--ctttctctctcatactcacat 8645374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27334854 - 27334899
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgta 233  Q
    ||||||||||||||| |||||||| || ||| ||||||||||||||    
T  27334854 aaaagagaaatgatatttgtacaactattttgtgacaacttttgta 27334899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27395594 - 27395639
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgta 233  Q
    ||||||||||||||| |||||||| || ||| ||||||||||||||    
T  27395594 aaaagagaaatgatatttgtacaactattttgtgacaacttttgta 27395639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 3180066 - 3180026
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||||||||||||| ||||||||| | ||||||||||||||    
T  3180066 aaagagaaatgatatttgtacaatcattttttgacaacttt 3180026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 11635606 - 11635550
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||| ||||| | ||||||||||||||||| |||||  ||||||||    
T  11635606 gagaaatgatatttgaacaatcattttttgacaacttttgtgacaactttctctctc 11635550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 22573447 - 22573495
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaacc 239  Q
    |||| ||||||| ||||||||||| ||||  ||||||||||||||||||    
T  22573447 agaggaatgatatttgtacaattatttttatacaacttttgtaacaacc 22573495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 31517242 - 31517202
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  31517242 aagagaaatgatatttgtacaaccactttttgacaactttt 31517202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 33712320 - 33712376
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||| ||||  ||||||||||||||||||| |||||  ||||||||    
T  33712320 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctc 33712376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 30170804 - 30170715
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||||| ||||||||  |||||||||||||||||| |||||||   ||||||||||||| |||||||||||||||||||||||    
T  30170804 aaaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaacc--atctctctcatactcacatgtgtttttattctctctct 30170715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 13592764 - 13592845
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattct 273  Q
    ||||||||||||| |||||||  || |||||||||||||||| |||||  |||| ||||||||||| |||||||||||||||||    
T  13592764 aagagaaatgatatttgtacacctattttttgacaacttttgaaacaa--ctctatctctcatactcacatgtgtttttattct 13592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 26629183 - 26629107
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgttttt 268  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||  ||||||||| |||||| |||||    
T  26629183 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctc--tctcatactcacatgttttttt 26629107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 14127250 - 14127335
Alignment:
Q  198 tgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||| ||||||||  |||||||||||| ||||| ||||||| ||||  ||||||||| ||||||||||| ||||||||||| |||||    
T  14127250 tgatatttgtacaaccactttttgacaatttttggaacaaccatctc--tctcatactcacatgtgttttaattctctctcttcttct 14127335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 37379501 - 37379414
Alignment:
Q  196 aatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||| ||||| ||  |||||||||||||||||| |||||||   ||||||||||||| ||||||| |||||||||| |||| |||||    
T  37379501 aatgatatttgtagaaccactttttgacaacttttgaaacaacc--atctctctcatactcacatgtgcttttattctccctcttcttct 37379414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 2731035 - 2730976
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||||||| ||| ||||  |||||||||||||||||||||||||  ||||||||    
T  2731035 aaagagaaatgatatttgaacaaccactttttgacaacttttgtaacaactttctctctc 2730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 8835941 - 8835886
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctct 247  Q
    ||||||||||| |||||| || |||||||||||||||||  |||||||||||||||    
T  8835941 gagaaatgatatttgtacgatcactttttgacaacttttaaaacaaccctctctct 8835886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 4721729 - 4721820
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| ||||||||  |  ||||||||||||| |  ||||||   | ||||||||||| ||||||||||||||||||||||| |||||    
T  4721729 gagaaatgatatttgtacaaccaaattttgacaactttggatacaacc--ttttctctcatactcacatgtgtttttattctctctcttcttct 4721820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 6511940 - 6511845
Alignment:
Q  183 ttatcaaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctctct 279  Q
    |||||||||||||||||||| || |||||| ||||||||| || |||||| | ||  || ||||||||||||||| | | |||||||||| |||||||    
T  6511940 ttatcaaaagagaaatgatatttatacaatcactttttgataaattttgtgataa--ctttctctctcatacttatattatgtttttattttctctct 6511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 5771951 - 5771890
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctct 249  Q
    ||||||||||||||| ||| ||||  | ||| ||||||||||||||||||| ||||||||||    
T  5771951 aaaagagaaatgatatttgaacaaccattttgtgacaacttttgtaacaactctctctctct 5771890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 21467384 - 21467466
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||| || |||| ||| |||||||||||||||  ||||| |     ||||||||||| ||||||||||||||||||||||    
T  21467384 gagaaatgatatttatacatttattttttgacaacttttaaaacaatc----atctctcatactcacatgtgtttttattctctctc 21467466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 43066667 - 43066581
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||||| ||||||||  ||||||| |||||||||| ||||| | |||||||  ||||   | ||||||||||||||||||||    
T  43066667 aagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctct--catatccatatgtgtttttattctctctc 43066581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 1068602 - 1068662
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||| |||||  ||||||||    
T  1068602 aaaagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctc 1068662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 5772047 - 5771991
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctc 244  Q
    ||||||||||||||| ||| ||||  | ||||||||||||||||||||||| |||||    
T  5772047 aaaagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactctctc 5771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 16585414 - 16585378
Alignment:
Q  243 tctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||| |||||||||||||||||||||||    
T  16585414 tctctctcatactcacatgtgtttttattctctctct 16585378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 18538384 - 18538423
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  18538384 aagagaaatgatacttgtacaaccactttttgacaacttt 18538423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 36023080 - 36023142
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctc 250  Q
    ||||||||||||||| ||| ||||||| ||||| |||| ||| || ||||| |||||||||||    
T  36023080 aaaagagaaatgatatttgaacaattattttttaacaattttggtgacaactctctctctctc 36023142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 7678728 - 7678817
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg-tgtttttattctctctct 279  Q
    ||||||||||||||| ||||||||  |||||||||||||||| || ||||   | ||||||||||||| ||||  | ||||||||||||||||    
T  7678728 aaaagagaaatgatatttgtacaaccactttttgacaacttt-gtgacaat--tttctctctcatactcacattatatttttattctctctct 7678817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 9199958 - 9199921
Alignment:
Q  240 ctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  9199958 ctctctctctcatactcacatgtgtttttattttctct 9199921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 26509484 - 26509525
Alignment:
Q  244 ctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||| ||||||||||||||| ||||||| |||||    
T  26509484 ctctctcatactcacatgtgtttttattttctctcttcttct 26509525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 40413413 - 40413372
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||    
T  40413413 aaaagagaaatgatatttgtacaattattttgtgacaacttt 40413372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 5740847 - 5740807
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  5740847 aagagaaatgatatttgtacaaccactttttgacaactttt 5740807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 21526352 - 21526308
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaaca 236  Q
    ||||||||||| ||||||||  ||||||| |||||||||||||||    
T  21526352 gagaaatgatatttgtacaaccactttttaacaacttttgtaaca 21526308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 8728652 - 8728565
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  |||||||||||||||||| |||||||||||||||||| |||| ||||||  |||||||||||||||    
T  8728652 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctctctct 8728565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 30838438 - 30838345
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||||| |||||||  ||||||||||||||||||| |||||||   ||||||||||||| |||||||||||||||||||| || |||||    
T  30838438 aagagaaatgatatttgtacatctactttttgacaacttttgaaacaacc--atctctctcatactcacatgtgtttttattctctcccttcttct 30838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 2629818 - 2629905
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  | |||||||||||||||| ||||||| ||||||||||||| | |||||| ||||||||||||||||    
T  2629818 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaaccttctctctctcatattcacatgtttttttattctctctct 2629905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 4800573 - 4800484
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctc--tctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||| |||||||  ||||||||| | |||||||||||||||||||||    
T  4800573 gagaaatgatatttatacaactactttttgacaacttttggaacaactctctctctctctcatactcatatgtgtttttattctctctct 4800484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 43057434 - 43057520
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||| ||||||||  |||||||||||||||||| || ||  ||| |||||||||||| |||| ||||||||||||||||||    
T  43057434 agagaaatgatatttgtacaaccactttttgacaacttttgaaataa--ctccctctctcatactcacatatgtttttattctctctct 43057520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 41621999 - 41621916
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    ||||||||||| ||||||||  |||||||||||||||||| |||||||     ||||||||||||||||||| |||||||||||||    
T  41621999 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaacc--acatctctcatacttacatgtgcttttattctctct 41621916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 611861 - 611930
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| ||||  || ||||||||||||| ||||    
T  611861 aaagagaaatgatatttgaacaattactttttgacaacttttgtgacaa--ctttctctctcatactcacat 611930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 26754709 - 26754626
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    ||||||||||| ||||||||  |  ||||||||||||| |  |||||||||||||||  ||||| |||||||||||||||||||||    
T  26754709 gagaaatgatatttgtacaaccaaattttgacaactttggagacaaccctctctctc--atactcacatgtgtttttattctctct 26754626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 35570813 - 35570906
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttatt-ctctctctgcttctc 286  Q
    ||||||||||| |||||||||||  |||||| |||||||   ||||||  |||||||||||||| |||||||||||| || |||||||| ||||||    
T  35570813 gagaaatgatatttgtacaattaaattttgataactttttagacaacc--ctctctctcatactcacatgtgttttttttcctctctcttcttctc 35570906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 35165676 - 35165767
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaactttt-gtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||||| |||||||| || ||||||| ||| ||| | |||||||||||| |||| ||||| |||||| ||| |||||| |||||    
T  35165676 aaagagaaatgatatttgtacaactattttttgataacctttcgaaacaaccctctccctcttatactcacatgtttttatattctatctct 35165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 844035 - 844124
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||| ||| ||||  | |||||||||||||||| |||||     ||||||||||| | |||||||| |||||||||||||| |||||    
T  844035 agagaaatgatatttgcacaaccattttttgacaacttttgaaacaa-----tctctctcatattcacatgtgtatttattctctctcttcttct 844124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 11148509 - 11148567
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| |||||  ||||||||    
T  11148509 aagagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctc 11148567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 19645686 - 19645608
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||| ||| |||||||| ||  ||||||||||||||| || |||    ||||||||||||| |||||||||||||||||||||    
T  19645686 aaattatatttgtacaactatattttgacaacttttgcaataac----tctctctcatactcacatgtgtttttattctctct 19645608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 14780494 - 14780438
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctc 246  Q
    ||||||||||||| |||||||  ||||||||||||||||||| || ||| |||||||    
T  14780494 aagagaaatgatatttgtacatctactttttgacaacttttgaaataactctctctc 14780438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 29462993 - 29463081
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctctct 279  Q
    ||||||||||| ||| ||||  | ||||||||||| ||||| |||||  ||||||||||||||| ||| | |||||||||| |||||||    
T  29462993 gagaaatgatatttgaacaacaattttttgacaacgtttgtgacaactttctctctctcatactcacattttgtttttattttctctct 29463081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 34428154 - 34428198
Alignment:
Q  186 tcaaaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||||||| |||||||| || |||||||||||||||    
T  34428154 tcaaaagagaaatgatatttgtacaactattttttgacaactttt 34428198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 125088 - 125130
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||||| |||||||| |||||| |||||||||||    
T  125088 aaaagagaaatgatatttgtacaactactttgtgacaactttt 125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 15022291 - 15022237
Alignment:
Q  214 actttttgacaacttttgtaacaaccctctctctctcatacttacatgtgttttt 268  Q
    |||||||||||||||||| ||||| ||||| ||||||||||| || ||| |||||    
T  15022291 actttttgacaacttttgaaacaatcctctttctctcatactcacttgttttttt 15022237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 19844386 - 19844340
Alignment:
Q  186 tcaaaagagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||||||||| |||||||| || ||||||| |||||||||    
T  19844386 tcaaaagagaaatgatatttgtacaactattttttgataacttttgt 19844340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 42446363 - 42446305
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctct 249  Q
    |||||||||||| ||| |||| || |||||||||||||||| ||||||  |||||||||    
T  42446363 agagaaatgatatttgaacaactattttttgacaacttttgcaacaactttctctctct 42446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 15918061 - 15918020
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgta 233  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||    
T  15918061 gagaaatgatatttgtacaattaatttgtgacaacttttgta 15918020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 19127124 - 19127209
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  ||||| ||||||||| | | ||||  |||||||||||||||| ||| | ||||||||||||||||||    
T  19127124 gagaaatgatatttgtacaaccactttgtgacaacttct-tgacaa--ctctctctctcatactcacattatgtttttattctctctct 19127209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 29803222 - 29803263
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    |||||||||||||| |||||||| || |||||||||||||||    
T  29803222 aaagagaaatgatatttgtacaactattttttgacaactttt 29803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 3109658 - 3109602
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||| | ||| ||||||||||||| |||||  ||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaacttttgtgacaacattctctctc 3109602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 4719650 - 4719706
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||  | ||||||||||||||||| |||||| | ||||||    
T  4719650 gagaaatgatatttgtacaaccaatttttgacaacttttgtgacaaccttttctctc 4719706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 11306698 - 11306753
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||  ||||||||    
T  11306698 gagaaatgatatttgtacaatcactttttaacaac-tttgtaacaactttctctctc 11306753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 15004795 - 15004710
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||| ||||  |||||||||||| ||||| ||||| |   ||||||||||||| |  ||| ||||||||||||||||    
T  15004795 gagaaatgatatttggacaaccactttttgacaatttttgaaacaatc--atctctctcatactcatttgtttttttattctctctct 15004710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 32380003 - 32379915
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg-tgtttttattctctctct 279  Q
    ||||||||||| || |||||||| || ||| |||||||||||| |||||  || ||||||||||||| ||||| |||| |||| ||||||||    
T  32380003 aaagagaaatggtatttgtacaactagtttatgacaacttttg-aacaa--ctttctctctcatactcacatgatgttgttatcctctctct 32379915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 25507255 - 25507342
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  |||||||||||||||||| |||||||||||||||||| |||| ||||||  |||||||||||||||    
T  25507255 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctctctct 25507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 31629604 - 31629695
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||||   ||||||| ||||| ||||||||||||||||||||||| |||||    
T  31629604 gagaaatgatatttgtacaactactttttgacaacttttggaacaacc--atctctctaatactcacatgtgtttttattctctctcttcttct 31629695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 13454027 - 13453942
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||   ||||||||||||||| ||||||||||||||||||||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaat--tctctctctcatactcacatgtgtttttattctctctc 13453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 22966782 - 22966871
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||||| ||||||||  ||||||||| |||||||| |||||||  |||||||||||| | |||||||||||||||||||||||    
T  22966782 aaaagagaaatgatatttgtacaaccactttttgataacttttgaaacaacc--ctctctctcatattcacatgtgtttttattctctctct 22966871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 45376292 - 45376197
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctc--tctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| ||||||||  ||||||||||||||||||| |||||||||||||  ||||||||| |||||| ||||| |||| ||||| |||||    
T  45376292 gagaaatgatatttgtacaaccactttttgacaacttttgtgacaaccctctctctctctcatactcacatgtatttttgttctatctcttcttct 45376197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 40106608 - 40106700
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||| ||||||||  ||| ||||||||||| || ||||||| ||||  ||||||||||||||| ||||||||||||||||| |||||    
T  40106608 agagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccatctc--tctcatacttacatgcgtttttattctctctcttcttct 40106700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 9979094 - 9979181
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||| ||||||||  ||||||| |||| |||||| |||||| ||||  ||||||||| |||||||||||||||||||||||    
T  9979094 aagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctc--tctcatactcacatgtgtttttattctctctct 9979181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 29472104 - 29472011
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||| |||||||| |||||||  ||||| ||||||||||||||||||| ||| |||||    
T  29472104 aaagagaaatgatatttgtaaaatcactttt-gacaacttttgaaacaaccccctctctc--atactcacatgtgtttttattctctatcttcttct 29472011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 31227622 - 31227542
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    ||||||||||||  |||||||| |||||||||||||||||| |||||    |||||||||||||| |||||| ||||||||||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaa----ctctctctcatactcacatgtttttttattctct 31227542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 28481777 - 28481870
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| ||| ||| ||||  | |||||||||||||||| ||||||    ||||||||||||| ||||||||||||||||| ||||| |||||    
T  28481777 aaaagagaaataatatttgaacaaccattttttgacaacttttggaacaac----tctctctcatactcacatgtgtttttattctatctcttcttct 28481870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 28544031 - 28544123
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttctc 286  Q
    ||||||||||| |||||| |  | ||||| ||||||||||| |||||| ||||||||  || || ||||||||||||||||||||||| ||||||    
T  28544031 gagaaatgatatttgtactaccattttttcacaacttttgtgacaaccatctctctc--attctcacatgtgtttttattctctctcttcttctc 28544123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 24727661 - 24727605
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||  |||||||||||||||||| |||||| |||||||||    
T  24727661 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaacactctctctc 24727605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 43820813 - 43820728
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    |||||||||||| ||||||||| | ||||| |||||||||| |||||||   ||| ||||||||| |||| | |||||||||||||||    
T  43820813 agagaaatgatatttgtacaatcatttttttacaacttttgaaacaacc--atctttctcatactcacatatttttttattctctctc 43820728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 41661330 - 41661418
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||| || |||| ||||  ||||||||| |||||  |||| |||||| ||||    
T  41661330 aaagagagatgatacttgtacaactactttttgacaactattgaaaaaaccttctc--tctcatactcacatgctttttcattctccctct 41661418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 44050012 - 44050071
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||||||||||||||||  | ||| ||||||||||||| |||||| ||||||||    
T  44050012 aaagagaaatgatacttgtacaaccattttatgacaacttttgtgacaaccttctctctc 44050071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 7258634 - 7258567
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||| | ||||||||| ||| ||||||||||||||||||||   | ||||||||||||||||||    
T  7258634 agagaaatgacatttgtacaatcactctttgacaacttttgtaacaa--ttttctctctcatacttacat 7258567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 15610879 - 15610820
Alignment:
Q  216 tttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||||||||||||| |||||||||  |||| ||||||| |||||| ||||||||||||||    
T  15610879 tttttgacaacttttgaaacaaccct--ctctatcatactcacatgtttttttattctctct 15610820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 39147761 - 39147811
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    |||| ||||||||||||||||||| || ||||| |||||||||||||||||    
T  39147761 aaaatagaaatgatacttgtacaactatttttttacaacttttgtaacaac 39147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 19695755 - 19695714
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  19695755 aaaagagaaatgatatttgtacaatcactttttgacaacttt 19695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 31415287 - 31415201
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||| ||||||  |||||||||||||||||||| |||||||   | | ||| ||||| || |||||||||||| |||||||    
T  31415287 agagaaatgatatttgtacgtttactttttgacaacttttgaaacaacc--atatttcttatactcacttgtgtttttattgtctctct 31415201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 18423836 - 18423747
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||||| |||||||  || ||||||| | |||||  ||||| |   || |||||||||| |||||||||||||||||||||||    
T  18423836 aaaagagaaatgatatttgtacatctattttttgatatcttttaaaacaatc--atcactctcatactcacatgtgtttttattctctctct 18423747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 27307306 - 27307236
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||| ||||  || ||||||||||||| |||||    
T  27307306 aaaagagaaatgatatttgtacaatcaatttgtgacaacttttgt-acaa--ctttctctctcatactcacatg 27307236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 4036948 - 4036903
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaaca 236  Q
    |||||||||||| |||||||| |||||||| ||||||||| |||||    
T  4036948 agagaaatgatatttgtacaactactttttaacaacttttataaca 4036903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 15124007 - 15123933
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgttttt 268  Q
    ||||||||||| ||||||||  | |||||||||||||||| ||||| |   | ||||||||||| ||||||||||||    
T  15124007 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaatc--atatctctcatactcacatgtgttttt 15123933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 29871425 - 29871384
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttg 231  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||    
T  29871425 aagagaaatgatatttgtacaattagtttatgacaacttttg 29871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 37731275 - 37731226
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaa 237  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||| ||||    
T  37731275 aaaagagaaatgatatttgaacaaccactttttgacaacttttgtgacaa 37731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 37767838 - 37767781
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||||| || |||||  |||||||||||||||||| ||||| | ||||||||    
T  37767838 agagaaatgatatttatacaaccactttttgacaacttttgaaacaatcatctctctc 37767781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 5054248 - 5054196
Alignment:
Q  186 tcaaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    |||||||| |||| ||| |||||||||||  |||||||||||||||| |||||    
T  5054248 tcaaaagataaataatatttgtacaattatattttgacaacttttgtgacaac 5054196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 5427296 - 5427248
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    ||||||||||||| ||||||||||| ||||||| || |||||| |||||    
T  5427296 aagagaaatgataattgtacaattaatttttgataatttttgtgacaac 5427248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 11965793 - 11965833
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||| ||| ||||| |||||||||||||||||||    
T  11965793 gagaaatgatatttgaacaatcactttttgacaacttttgt 11965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 15260307 - 15260363
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||| ||||  |||||| |||||||||||| ||||| |||||||||    
T  15260307 gagaaatgatatttgaacaaccacttttagacaacttttgtgacaactctctctctc 15260363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 18531597 - 18531641
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||||||| |||||||| || |||||||||| ||||||    
T  18531597 aaaagagaaatgatatttgtacaactattttttgacaatttttgt 18531641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 22303203 - 22303254
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctc 244  Q
    ||||||||||| |||||||| || |||||||||||||||| |||||| |||||    
T  22303203 gagaaatgatatttgtacaactattttttgacaacttttg-aacaacactctc 22303254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 39285854 - 39285890
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  39285854 agaaatgatatttgtacaatcactttttgacaacttt 39285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 35883680 - 35883594
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||||||   | ||||||||||| ||||||||||||||||||||||    
T  35883680 aagagaaatgatatttgtacaattattttttgacaacttttgaaacaacc--atatctctcatactcacatgtgtttttattctctctc 35883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 42577468 - 42577565
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||||||| ||||||||| || |||| |||||||||| || ||   ||||||||||||| ||||||||||||||||||||||||| |||||    
T  42577468 aaaagagaaatgatatttgtacaatcacattttaacaacttttgaaataattttctctctctcatatttacatgtgtttttattctctctcttcttct 42577565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 12022008 - 12021929
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattc 272  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||    ||||||||||| | |||| |||||||||    
T  12022008 aagagaaatgatacttttacaattactttttgacaacttttgaaacaaccc---atctctcatactcaaatgtatttttattc 12021929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 1523364 - 1523282
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||||||| ||||||||  ||||||||| |||||||| || |||  | ||||| |||||||||||||||||||||||||||||    
T  1523364 agaaatgatatttgtacaaccactttttgataacttttgaaataac--tatctctgtcatacttacatgtgtttttattctctct 1523282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 1922495 - 1922406
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttc 284  Q
    |||||||||| ||||||||| ||||||||| || |||||| |||||||||||  ||||||||| |||| |||| ||||| ||||||| ||||    
T  1922495 agaaatgatatttgtacaatcactttttgataatttttgtgacaaccctctc--tctcatactcacatatgttattattttctctcttcttc 1922406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 40809498 - 40809577
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||||||| ||||||||| |||| ||||||||||||| |||||||   ||||||||||||||  |||||||||||||||||||    
T  40809498 agaaatgatatttgtacaat-acttattgacaacttttgaaacaacc--atctctctcatactt--atgtgtttttattctctct 40809577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 49805009 - 49804915
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||| |||| || ||||| || ||||||||||||||||||| || || |   ||| ||||||||||||||||||||| ||||||||||| |||||    
T  49805009 aaagaggaatggtatttgtataactactttttgacaacttttgaaataatc--ttctttctcatacttacatgtgttttaattctctctcttcttct 49804915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 2279371 - 2279302
Alignment:
Q  214 actttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||||||||| ||||||  | ||||||||||  | ||||||||||||||||||||||| |||||    
T  2279371 actttttgacaacttttgaaacaac--tatctctctcatgttcacatgtgtttttattctctctcttcttct 2279302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 43891792 - 43891758
Alignment:
Q  242 ctctctctcatacttacatgtgtttttattctctc 276  Q
    |||||||||||||||||||||||||||||||||||    
T  43891792 ctctctctcatacttacatgtgtttttattctctc 43891758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 48858818 - 48858889
Alignment:
Q  187 caaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||||||| ||| ||||  ||||||||||||||||||| ||||  || ||||||||||||| ||||    
T  48858818 caaaagagaaatgatatttgaacaaccactttttgacaacttttgtgacaa--ctttctctctcatactcacat 48858889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 27742613 - 27742673
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||| |||||  ||||||||    
T  27742613 aaaagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctc 27742673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 37843505 - 37843466
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  37843505 aagagaaatgatatttgtacaactactttttgacaacttt 37843466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 39788800 - 39788765
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaa 225  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39788800 aagagaaatgatatttgtacaattactttttgacaa 39788765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 3904233 - 3904267
Alignment:
Q  243 tctctctcatacttacatgtgtttttattctctct 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  3904233 tctctctcatactcacatgtgtttttattctctct 3904267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 25031704 - 25031795
Alignment:
Q  186 tcaaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||| |||||||| ||| ||||| |  ||||||||||||||||||  |||||   ||||||||||||||| |||| ||||||  ||||||||||    
T  25031704 tcaatagagaaataatatttgtaaatctactttttgacaacttttaaaacaa--gtctctctctcatactcacatatgttttctttctctctct 25031795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 33694274 - 33694220
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctc 244  Q
    ||||||||||||| ||||||||| ||||||| |||||||||  |||||| |||||    
T  33694274 aagagaaatgatatttgtacaatcactttttaacaacttttaaaacaactctctc 33694220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 17082815 - 17082758
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||| ||| ||| |||| |||||||||||||||||||| |||||  ||||||||    
T  17082815 agagaaataatatttgaacaactactttttgacaacttttgtgacaactttctctctc 17082758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 35196130 - 35196178
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    |||||||||||||||||||||||  | ||| |||||||||||||||||||    
T  35196130 aaagagaaatgatacttgtacaa-cattttatgacaacttttgtaacaac 35196178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 48983742 - 48983672
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    |||||||||||||| ||| ||||  | ||||||||||||||||| ||||  || ||||||||||||| |||||    
T  48983742 aaagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa--ctttctctctcatactcacatg 48983672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 51231374 - 51231304
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttt 267  Q
    |||||||| ||||||||  ||||||| ||||||||||  |||||  ||||||||||||||| |||||| ||||    
T  51231374 aaatgatatttgtacaaccactttttaacaacttttggcacaac--tctctctctcatactcacatgtatttt 51231304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 4154589 - 4154629
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttt 229  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  4154589 aaagagaaatgatatatgtacatttactttttgacaacttt 4154629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 16987445 - 16987485
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||| ||||||||||| ||||| |||||||||    
T  16987445 aagagaaatgatatttgtacaattattttttaacaactttt 16987485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 17777517 - 17777466
Alignment:
Q  216 tttttgacaacttttgtaacaaccctctctctctcatacttacatgtgttttt 268  Q
    |||||||||||||||| ||||| || |||||||||||||| |||||| |||||    
T  17777517 tttttgacaacttttgaaacaagcc-ctctctctcatactcacatgttttttt 17777466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 28501471 - 28501532
Alignment:
Q  216 tttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||||||| ||| |||  |||||||||||| | | ||||||||| |||||||||||    
T  28501471 tttttgacaacttttggaaccacc--ctctctctcatattcagatgtgttttaattctctctct 28501532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 49931553 - 49931609
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||| | ||||| ||||||||||| |||||  ||||||||    
T  49931553 gagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctc 49931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 47187593 - 47187506
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| |||||||  || ||||||||||||||||||||||| ||||| |||||    
T  47187593 aagaggaatgatatttgtacaattactttttcacaacttttgaaacaacc--ctttctctcatacttacatgtgttttaattctttctct 47187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 9327056 - 9326965
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| ||||||||| | |||| ||||||||||| |||||||   ||| ||||||||| |||||| |||||||||||||||| |||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaacc--atctatctcatactcacatgtctttttattctctctcttcttct 9326965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 19623325 - 19623238
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||||| ||||||||| ||||||||| |||||||  |||||     |||||||||||||||||||| ||||||||||||||||    
T  19623325 aagagaaatgatatttgtacaatcactttttgataacttttaaaacaa--taatctctctcatacttacatgtctttttattctctctct 19623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 11323912 - 11323998
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||| ||||||||  ||||||| ||||||||||  |||||    |||||||||||||| |||||||||||||||||||||| |||||    
T  11323912 aaatgatatttgtacaaccactttttaacaacttttgatacaac----tctctctcatacttccatgtgtttttattctctctcttcttct 11323998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 6976942 - 6977015
Alignment:
Q  204 ttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||| |||||||||||||||||  |||||||  |||||| ||||||| ||||| |||||||||||||||||    
T  6976942 ttgtacaatcactttttgacaacttttaaaacaacc--ctctctatcatactcacatgcgtttttattctctctct 6977015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 31143267 - 31143351
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    |||||||| ||||| ||||||||| | |||||||||||||||| ||||| |   ||||||| ||||| |||||||||||||||||||    
T  31143267 aaagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatc--atctctctaatactcacatgtgtttttattctct 31143351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 50559287 - 50559217
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| |||||||| || ||||||||||||||||| ||||   | ||||||||||||||||||    
T  50559287 aaaagagaaatgatatttgtacaactattttttgacaacttttgtgacaa--ttttctctctcatacttacat 50559217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 39284738 - 39284655
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||| | | |||||||||||||||||| |||||    |||||||||||||| | |||| |||||||| |||||||    
T  39284738 gagaaatgatatttgtatattcactttttgacaacttttgaaacaa----ctctctctcatactcatatgtatttttattatctctct 39284655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 27718858 - 27718780
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttatt 271  Q
    |||||||||||||||||| ||| | ||| | ||||||||||| ||||  || ||||||||||||| |||| ||||||||||    
T  27718858 agagaaatgatacttgtataatcattttgtaacaacttttgtgacaa--ctttctctctcatactcacatatgtttttatt 27718780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 41850945 - 41851027
Alignment:
Q  194 gaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||| ||||||||  |  ||||||||||||||| |||||||  ||| |||||||||| || ||||||||||| |||||||    
T  41850945 gaaatgatatttgtacaaccatattttgacaacttttgaaacaacc--ctccctctcatactcacttgtgtttttatcctctctc 41851027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 38018001 - 38017941
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctct 249  Q
    |||||||||||||| ||||||||  ||| ||||||||||| || |||||| ||||||||||    
T  38018001 aaagagaaatgatatttgtacaaccactctttgacaacttatgaaacaactctctctctct 38017941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 41448248 - 41448165
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||| ||||||||  | ||||  |||||||||| ||||||||||||  ||||||||| |||||   |||||||||||||||    
T  41448248 agagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctc--tctcatactcacatg---ttttattctctctct 41448165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 48405408 - 48405476
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||| ||||||||  | ||| ||||||||||||||||||  || ||||||||||||| ||||    
T  48405408 aagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaa--ctttctctctcatactcacat 48405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 3282534 - 3282616
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    |||||||||| ||||| || || |||||||||||||||| |||||   | ||| ||||||||| |||||| |||||||||||||||    
T  3282534 agaaatgatatttgtataagtattttttgacaacttttgaaacaa--ttatctttctcatactcacatgt-tttttattctctctc 3282616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 19150391 - 19150324
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||| ||||||||| | ||||| ||||||||||| ||||  || ||||||||||| ||||||    
T  19150391 agagaaatgatatttgtacaatcattttttaacaacttttgtgacaa--ctttctctctcatatttacat 19150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 39901587 - 39901681
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||||||| ||||||||| | ||||||| || ||||| |||||  || ||| ||||||||| |||||||  ||||||| |||||| |||||    
T  39901587 aaaagagaaatgatatttgtacaatcattttttgataatttttggaacaa--ctttctatctcatactaacatgtg-atttattcactctcttcttct 39901681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 25188536 - 25188479
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctct 249  Q
    ||||||||||| ||| |||| || |||||||||||||||| ||||||  |||||||||    
T  25188536 gagaaatgatatttgaacaactattttttgacaacttttgcaacaactttctctctct 25188479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 45529016 - 45528975
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    |||||||||||||| |||||||| || |||||||||||||||    
T  45529016 aaagagaaatgatatttgtacaactattttttgacaactttt 45528975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 5393905 - 5393849
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| ||||||||| | ||| | ||||||||||  |||||||||||||||    
T  5393905 gagaaatgatatttgtacaatcattttcttacaacttttgggacaaccctctctctc 5393849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 32622386 - 32622346
Alignment:
Q  245 tctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| |||||||| |||||||||||||| |||||    
T  32622386 tctctcatactcacatgtgtatttattctctctcttcttct 32622346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 39629906 - 39629854
Alignment:
Q  196 aatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||| |||||||| || ||||| ||||||||||| |||||| ||||||||    
T  39629906 aatgatatttgtacaactatttttttacaacttttgtgacaaccttctctctc 39629854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 41443266 - 41443222
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||||||| ||| || || |||||||||||||||||||    
T  41443266 aaaagagaaatgatatttgaacgatcactttttgacaacttttgt 41443222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 52454169 - 52454125
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||||||| ||||||||| | ||| |||||||||||||    
T  52454169 aaaagagaaatgatatttgtacaatcaatttgtgacaacttttgt 52454125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 53473603 - 53473651
Alignment:
Q  185 atcaaaagagaaatgatacttgtacaattactttttgacaacttttgta 233  Q
    |||||||||||||||||| ||||||||| | ||| ||| ||||||||||    
T  53473603 atcaaaagagaaatgatatttgtacaatcaatttgtgataacttttgta 53473651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 35206165 - 35206251
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctct 277  Q
    |||||||||||||  ||||||||| ||||||||| |||||||| |||||  |||||||||| ||||| |||||||||||||||||||||    
T  35206165 aaagagaaatgatgtttgtacaatcactttttgataacttttgaaacaa--ctctctctcttatactcacatgtgtttttattctctct 35206251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 13140369 - 13140283
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||| |||||||  || |||||||||||||||| ||||||    ||||||||||||| ||||||||||||||||||||||| |||||    
T  13140369 aaatgatatttgtacatctattttttgacaacttttgaaacaac----tctctctcatactcacatgtgtttttattctctctcttcttct 13140283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 56215605 - 56215689
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctc 278  Q
    ||||||||||| ||||||||  |||||||||||||||||| | ||| |   ||||||||||||| ||||||||||||||||||||||    
T  56215605 gagaaatgatatttgtacaaccactttttgacaacttttgaaccaatc--atctctctcatactcacatgtgtttttattctctctc 56215689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 961272 - 961367
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||||||| ||| ||||||||| | ||||||| |||||||| |||||  |||||||||||||||| |||||| |||| ||| ||||||| |||||    
T  961272 aaaagagaaataatatttgtacaataattttttgataacttttgaaacaa--ctctctctctcatactcacatgttttttcattatctctcttcttct 961367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 10762574 - 10762488
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||| || ||||| |||||||||| |||||||| |||||   ||||||| | ||||| |||| ||||||||||||||||||    
T  10762574 agagaaatgatatttatacaactactttttgataacttttgaaacaa--ttctctcttttatactcacatatgtttttattctctctct 10762488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 44121253 - 44121208
Alignment:
Q  240 ctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  44121253 ctctctctctcatactcacatgtgtttttattctctctcttcttct 44121208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 29963607 - 29963700
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttctc 286  Q
    ||||||| |||| || ||||  ||||||||||||||||||| ||||| | |||||||   ||||| |||| |||||||||||||||||| ||||||    
T  29963607 agagaaacgatatttatacatatactttttgacaacttttgaaacaatcatctctctt--atactcacatttgtttttattctctctcttcttctc 29963700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 45652665 - 45652726
Alignment:
Q  216 tttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||||||| ||||| ||||| ||||  ||||| |||||||||||||||||||||||    
T  45652665 tttttgacaacttttgaaacaaacctctatctc--atactcacatgtgtttttattctctctct 45652726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 50831829 - 50831781
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  50831829 aagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 50831781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 53190929 - 53191009
Alignment:
Q  195 aaatgatacttgtacaattactttttgacaacttttgtaacaacc-ctctctctctcatacttacatgtgtttttattctc 274  Q
    |||||||| ||||||||  ||||||| ||||||||||||| |||| | ||||||  |||||| ||||||||||||||||||    
T  53190929 aaatgatatttgtacaaccactttttaacaacttttgtaataaccaccctctcttccatactcacatgtgtttttattctc 53191009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 12593685 - 12593602
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    ||||||||||||| || || ||||| |||||||||| ||||| || || |   | |||||||||||||||||||||||||||||||    
T  12593685 aagagaaatgatatttatataattattttttgacaatttttgaaataatc--atttctctcatacttacatgtgtttttattctct 12593602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 1015005 - 1015061
Alignment:
Q  224 aacttttgtaacaaccctct--ctctctcatacttacatgtgtttttattctctctc 278  Q
    |||||||| |||||||||||  |||||||||||| |||||||||| |||||||||||    
T  1015005 aacttttgaaacaaccctctctctctctcatactcacatgtgtttatattctctctc 1015061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 20760252 - 20760301
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  20760252 aaagagaaatgatatttgtacaattattttttaacaacttttgtgacaac 20760301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 20766643 - 20766692
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaac 238  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  20766643 aaagagaaatgatatttgtacaattattttttaacaacttttgtgacaac 20766692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 42815401 - 42815479
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgttttta 269  Q
    |||||||||||||| |||||||| || ||| | ||||||||||| ||||  || ||||||||||||| |||| ||||||||    
T  42815401 aaagagaaatgatatttgtacaactattttgtaacaacttttgtgacaa--ctttctctctcatactcacatatgttttta 42815479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 51296267 - 51296222
Alignment:
Q  185 atcaaaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||    
T  51296267 atcaaaagagaaatgatatttgtacaatcactttatgacaactttt 51296222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 3078979 - 3078894
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||| | ||| | ||||||||||| ||||  || ||||||||||||| |||| |||||||| ||| |||||    
T  3078979 gagaaatgatatttgtacaatcattttgtaacaacttttgtgacaa--ctttctctctcatactcacatatgtttttactctatctct 3078894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 35748737 - 35748644
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||| || ||| |||| |||||||||| || ||||| ||||| | | ||||||  ||||| | ||||||||||||||||||||| |||||    
T  35748737 aagagaaatgttatttgcacaactactttttgataatttttggaacaatcatatctctc--atactcagatgtgtttttattctctctcttcttct 35748644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 38864810 - 38864741
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||||| ||||||||||| ||| ||||||||||| | ||||  || ||||||||||||| ||||    
T  38864810 aaagagaaatgatatttgtacaattattttgtgacaacttttttgacaa--ctttctctctcatactcacat 38864741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 40293239 - 40293320
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctc 276  Q
    |||| ||||||| |||||||   | |||||||||| ||||| |||||||||||    |||||||| ||||||||||||||||||||    
T  40293239 agaggaatgatatttgtacatcaattttttgacaatttttgaaacaaccctct----ctcatactcacatgtgtttttattctctc 40293320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 17367446 - 17367501
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    |||||||||| || |||||  |||||||||||||||||| ||||||| ||||||||    
T  17367446 agaaatgatatttatacaaccactttttgacaacttttgaaacaaccatctctctc 17367501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 50890146 - 50890079
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||| |||||||| || ||||||||||||||||| ||||  || ||||||||||||| ||||    
T  50890146 aagagaaatgatatttgtacaacta-tttttgacaacttttgtgacaa--ctttctctctcatactcacat 50890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 9032780 - 9032846
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    ||||||||||| ||||||||| | ||| ||||||||||||| ||||  || |||||||||||||||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaacttttgt-acaa--ctttctctctcatacttacatg 9032846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 32058395 - 32058361
Alignment:
Q  245 tctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| |||||||||||||||||||||||    
T  32058395 tctctcatactcacatgtgtttttattctctctct 32058361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 42915291 - 42915253
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttt 229  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  42915291 agagaaatgatatttgtacaatcactttttgacaacttt 42915253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 3222986 - 3223055
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||  || ||||||||||||| |||||    
T  3222986 aaagagaaatgatatttgtacaatcaatttgtgacaacttttgt-acaa--ctttctctctcatactcacatg 3223055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 5932835 - 5932769
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||| ||| ||||  ||||||||||||||||||| ||||  || ||||||||||||| ||||    
T  5932835 gagaaatgatatttgaacaaccactttttgacaacttttgtgacaa--ctttctctctcatactcacat 5932769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 15596396 - 15596481
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||  ||||| ||||||||| | | ||||  |||||||||||||||| ||| | ||||||||||||||||||    
T  15596396 gagaaatgatatttgtacaaccactttgtgacaacttct-tgacaa--ctctctctctcatactcacattatgtttttattctctctct 15596481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 32871899 - 32871809
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    |||||||||| |||||| | || || ||||||||||||| ||||| |   ||||||||||| | ||||||  ||||||||||||||| |||||    
T  32871899 agaaatgatatttgtaccactatttcttgacaacttttgaaacaatc--atctctctcatattcacatgtagttttattctctctcttcttct 32871809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 33820413 - 33820324
Alignment:
Q  186 tcaaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttaca-tgtgtttttattctctct 277  Q
    ||||||||||||||||| |||||||| || ||| | ||||||||| | ||||  || ||||||||||||| ||| | ||||||||||||||||    
T  33820413 tcaaaagagaaatgatatttgtacaactattttctaacaactttt-tgacaa--ctttctctctcatactcacattatgtttttattctctct 33820324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 44272884 - 44272843
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    |||||||||||||| |||||||| || |||||||||||||||    
T  44272884 aaagagaaatgatatttgtacaactattttttgacaactttt 44272843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 44368277 - 44368232
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgta 233  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  44368277 aaaagagaaatgatatttgtacaatcaatttgtgacaacttttgta 44368232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 54000694 - 54000764
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||  |||||||||||| |||| ||||||  || ||||||||||||| ||||    
T  54000694 aaaagagaaatgatatttgaacaaccactttttgacaatttttataacaa--ctttctctctcatactcacat 54000764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 7632537 - 7632493
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgt 232  Q
    ||||||||||||||| ||| ||||| | |||||||||||||||||    
T  7632537 aaaagagaaatgatatttgaacaatcaatttttgacaacttttgt 7632493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 15638160 - 15638200
Alignment:
Q  191 agagaaatgatacttgtacaattactttttgacaacttttg 231  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaacttttg 15638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 25221797 - 25221749
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaa 237  Q
    |||||||||||||| ||||| ||| ||||||| ||||||||||| ||||    
T  25221797 aaagagaaatgatagttgtataatcactttttaacaacttttgtgacaa 25221749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 31221410 - 31221478
Alignment:
Q  189 aaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    |||||||||||||| ||||||||| | ||| ||||||||||| | ||||  || ||||||||||||||||||    
T  31221410 aaagagaaatgatatttgtacaatcaatttgtgacaacttttat-acaa--ctttctctctcatacttacat 31221478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 40693694 - 40693638
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctc 248  Q
    ||||||||||| || |||||||| |||||||||| |||||  |||||| ||||||||    
T  40693694 gagaaatgatatttatacaattaatttttgacaatttttgagacaaccttctctctc 40693638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 42853937 - 42853977
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaactttt 230  Q
    ||||||||||||| |||||||| || |||||||||||||||    
T  42853937 aagagaaatgatatttgtacaactattttttgacaactttt 42853977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 51255744 - 51255813
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatg 261  Q
    ||||||||||||| ||| ||||  | ||||||||||||||||| ||||  || ||||||||||||| |||||    
T  51255744 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa--ctttctctctcatactcacatg 51255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 52372263 - 52372179
Alignment:
Q  192 gagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    ||||||||||| ||||||||||| ||||||| |||||||| || ||  || ||| |||| |||| |||||| |||||||||| |||||    
T  52372263 gagaaatgatatttgtacaattaatttttgataacttttgaaataa--ctatctatctcttactcacatgt-tttttattctttctct 52372179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 854 - 761
Alignment:
Q  190 aagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||| ||||||| ||||||||| | |||||||||||||||| |||||||   ||||||||||||| ||||||||||| ||||||||||| |||||    
T  854 aagaggaatgatatttgtacaatcattttttgacaacttttgaaacaacc--atctctctcatactcacatgtgttttaattctctctcttcttct 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 11612 - 11533
Alignment:
Q  204 ttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctctgcttct 285  Q
    ||||||| ||| |||||||||||||||| |||||   ||||||||||||||| | ||||||||||||||||||||| |||||    
T  11612 ttgtacatttattttttgacaacttttgaaacaat--tctctctctcatactcaaatgtgtttttattctctctctccttct 11533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 10932 - 11002
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||  ||||||||||||||||||| ||||  || ||||||||||||| ||||    
T  10932 aaaagagaaatgataattgaacaaccactttttgacaacttttgtgacaa--ctttctctctcatactcacat 11002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 15901 - 15824
Alignment:
Q  193 agaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctct 275  Q
    |||||| ||| ||||||||| | ||||||| |||||||| |||||||||||||     ||| | |||||||||||||||||||    
T  15901 agaaataatatttgtacaataattttttgataacttttgaaacaaccctctct-----ataatcacatgtgtttttattctct 15824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 49425 - 49338
Alignment:
Q  191 agagaaatgatacttgtacaattacttttt-gacaacttttgtaacaaccctctctctctcatacttacatgtgtttttattctctctct 279  Q
    |||||||||||| ||||||||  | ||||| ||||| ||||| |||| |  |||| ||| |||||| |||||||||||||||||||||||    
T  49425 agagaaatgatatttgtacaaccatttttttgacaatttttgaaacatc--tctccctcacatactgacatgtgtttttattctctctct 49338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 18000 - 18069
Alignment:
Q  188 aaaagagaaatgatacttgtacaattactttttgacaacttttgtaacaaccctctctctctcatacttacat 260  Q
    ||||||||||||||| ||| ||||||| |||||||||||||| || ||||   | ||||||||||||||||||    
T  18000 aaaagagaaatgatatttggacaattattttttgacaacttt-gtgacaat--tttctctctcatacttacat 18069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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