View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_1 (Length: 626)
Name: NF9789_low_1
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 610
Target Start/End: Complemental strand, 5913801 - 5913196
Alignment:
| Q |
20 |
ccacaaacgagactacaacataggggatgtgattatcttgtcgctccaacaaattcaactat-----------cttttttatgactttttatgttaaaaa |
108 |
Q |
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| T |
5913801 |
ccacaaacgagactatgatataggggatgtgattatcttgttgctccaacaaattcaactattttctctctatctttttcatgactttttatgttaaaaa |
5913702 |
T |
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| Q |
109 |
acattgtattatcacgtgtcatacttgaattcaattaatgatccatagatgagaaatatggtttatctatatggtaacattgagtgtaatgtatctcaaa |
208 |
Q |
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| T |
5913701 |
acattgtattatcacgtgtgacacttgaattcaatcaatgatccatagatgagaaatatggtttatctatatggtaacattgagtgtaatgtatctcaaa |
5913602 |
T |
|
| Q |
209 |
gagtacactacatatacagctctccaagtgcatggacgtgatagaatttgatagcatatctaaaggaatcacgtggttcgtgtgtctcggtcctactgca |
308 |
Q |
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| T |
5913601 |
gagtacactacatatacagctctccaagtgcatggacgtaatagaatttgatagcatatctaaaggaatcacgtggttcgtgtgtctcggtcctactgca |
5913502 |
T |
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| Q |
309 |
gaatcnnnnnnnctgaaaccatttctagccacaaatccactactaacttttacccatac--tatactacagccacacacatacacatttttggggca--- |
403 |
Q |
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| T |
5913501 |
gaatcaaaaaaactgaaaccatttctagccacaaatcctttactaacttttacccatactatatactacagccacacacatacacatttttggggcacat |
5913402 |
T |
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| Q |
404 |
catcacagccacgaacttgttttttattgcgcaataataacatgaaaaagtgcacaaataattgatttataaagttattgttggtccctttgtccagtgc |
503 |
Q |
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| T |
5913401 |
catcacagccacgaacttgttttttattgcgcaataataagatgaaaaagtgcataaataattgatttataaagttattgttggtccc-ttgtccagtgc |
5913303 |
T |
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| Q |
504 |
cgtatacgatgcatgtaagtaaagctgactcatagttgcacaagcatcatcatgaaagatgaatgatgatgcatgtaaatccaaataattttaaaatgaa |
603 |
Q |
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| T |
5913302 |
cgtatacgatgcatgtaaataaagctgactcatagttgcactagcatcatcatgaaagatgaatgatgatgcatgtaaatccaaataatttaaaaatgaa |
5913203 |
T |
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| Q |
604 |
atgatgt |
610 |
Q |
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| T |
5913202 |
attatgt |
5913196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 5920151 - 5920102
Alignment:
| Q |
244 |
acgtgatagaatttgatagcatatctaaaggaatcacgtggttcgtgtgt |
293 |
Q |
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| T |
5920151 |
acgtaatagaatttgataccatatctaaaggaattacgtggttagtgtgt |
5920102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 5922841 - 5922805
Alignment:
| Q |
50 |
gattatcttgtcgctccaacaaattcaactatctttt |
86 |
Q |
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| T |
5922841 |
gattatcttgtcactccaacaaattcaactatttttt |
5922805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 49583639 - 49583595
Alignment:
| Q |
95 |
ttttatgttaaaaaacattgtattatcacgtgtcatacttgaatt |
139 |
Q |
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| T |
49583639 |
ttttatgtttaaaaaaattgtattatcacgtgtcacaattgaatt |
49583595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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