View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9789_low_11 (Length: 276)
Name: NF9789_low_11
Description: NF9789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9789_low_11 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 74 - 276
Target Start/End: Complemental strand, 25730106 - 25729904
Alignment:
| Q |
74 |
ttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatcacttccacctcaaca |
173 |
Q |
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| T |
25730106 |
ttagtatttgtgagcaatctttagaatgtgagaggtgagtttttttggtttggagaacatgaccatatgatctgaaccatttatcactttcacctcaaca |
25730007 |
T |
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| Q |
174 |
tatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctat |
273 |
Q |
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| T |
25730006 |
tatggaccagtattcccaatcacccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgtagactttaggcacccttccatacctat |
25729907 |
T |
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| Q |
274 |
gct |
276 |
Q |
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||| |
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| T |
25729906 |
gct |
25729904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 1782521 - 1782796
Alignment:
| Q |
1 |
catctataaatcacaaactaataaagatgaagaacttaaaactgttgatnnnnnnnnnccaatgaaagcttatttagtatttgtgagcaatctttagaat |
100 |
Q |
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| T |
1782521 |
catctataaatcacaaactaataaagatgaaggtcttaaaactgttgataaaaaaaaaccaatgaaagcttatttagtatttgtgagcaatctttagaat |
1782620 |
T |
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| Q |
101 |
gtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatcacttccacctcaacatatggaccagtattcccaatcatccac |
200 |
Q |
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| T |
1782621 |
gtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaattatccat |
1782720 |
T |
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| Q |
201 |
atttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatgct |
276 |
Q |
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| T |
1782721 |
aattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctctgct |
1782796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 274
Target Start/End: Original strand, 1800376 - 1800574
Alignment:
| Q |
76 |
agtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatcacttccacctcaacata |
175 |
Q |
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| T |
1800376 |
agtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacata |
1800475 |
T |
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| Q |
176 |
tggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatg |
274 |
Q |
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| T |
1800476 |
tggacgagtattctcaatcatccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctatg |
1800574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 59 - 267
Target Start/End: Original strand, 1776153 - 1776361
Alignment:
| Q |
59 |
ccaatgaaagcttatttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatc |
158 |
Q |
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| T |
1776153 |
ccaataaaagcatatctaatatttgtgagcactccttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatc |
1776252 |
T |
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| Q |
159 |
acttccacctcaacatatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggta |
258 |
Q |
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| T |
1776253 |
actttcacttcaacatatggaccagttctctcaattatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggta |
1776352 |
T |
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| Q |
259 |
cccttccat |
267 |
Q |
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| T |
1776353 |
cccttccat |
1776361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 1771600 - 1771696
Alignment:
| Q |
120 |
ggtttagagaacatgaccatgtgatctgaaccatttatcacttccacctcaacatatggaccagtattcccaatcatccacatttgataatcctctg |
216 |
Q |
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| T |
1771600 |
ggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaatcctctg |
1771696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 19790131 - 19790008
Alignment:
| Q |
60 |
caatgaaagcttatttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatca |
159 |
Q |
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| T |
19790131 |
caatgaaagcatatctaatatttgtgagaaatctttagtatgtgagagttaagtttttt-ggtttggagaacatgaccatttgatctgaatcctttatca |
19790033 |
T |
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| Q |
160 |
cttccacctcaacatatggaccagt |
184 |
Q |
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| T |
19790032 |
cattcacctcaacatatggaccagt |
19790008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 47249773 - 47249727
Alignment:
| Q |
60 |
caatgaaagcttatttagtatttgtgagcaatctttagaatgtgaga |
106 |
Q |
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| T |
47249773 |
caatgaaagcatatataatatttgtgagcaatctttagtatgtgaga |
47249727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 1672778 - 1672845
Alignment:
| Q |
78 |
tatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatc |
145 |
Q |
| |
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| T |
1672778 |
tatttgtgagcaatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatc |
1672845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 4081539 - 4081451
Alignment:
| Q |
59 |
ccaatgaaagcttatttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaa |
149 |
Q |
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| T |
4081539 |
ccaatgaaagcgtatctaatatttgtgaccaatctttagtatgtgag--gtgagcttttttagtttagagaacatggccatgtgatctgaa |
4081451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 21124822 - 21124749
Alignment:
| Q |
109 |
tgagttttttaggtttagagaacatgaccatgtgatctgaaccatttatcacttccacctcaacatatggacca |
182 |
Q |
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| T |
21124822 |
tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggacca |
21124749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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